Report for Sequence Feature Glyma01g04650
Feature Type: gene_model
Chromosome: Gm01
Start: 4282744
stop: 4288290
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g04650
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G10385 AT
Annotation by Michelle Graham. TAIR10: Vps51/Vps67 family (components of vesicular transport) protein | chr1:3403224-3405856 FORWARD LENGTH=754
SoyBase E_val: 0 ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2215
KOG
Exocyst complex subunit
JGI ISS
PTHR21426 Panther
FAMILY NOT NAMED
JGI ISS
PTHR21426:SF4 Panther
gb def: F14N23.28
JGI ISS
PF08700 PFAM
Vps51/Vps67
JGI ISS
UniRef100_F4I4B6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Vps51/Vps67 family (Components of vesicular transport) protein n=1 Tax=Arabidopsis thaliana RepID=F4I4B6_ARATH
SoyBase E_val: 0 ISS
UniRef100_I1J5I0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J5I0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g04650
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g04650
Paralog Evidence Comments
Glyma02g02910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g04650 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g039700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g04650
Coding sequences of Glyma01g04650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g04650.2 sequence type=CDS gene model=Glyma01g04650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATCAGTCACCATTCCTGGCTCAGAGAGGATCTGTGTCATCCAGCCTTGGAAACTCTGCAGAACTTGATGCCAATCTCACACTCAGCGATAAGCTCAAGGTTTTCAAAAGCTCCACCTTTGATCCCAATAACTATGTTGCCTCCAAATCCCGCAGCATGAACGAGAAGGAGATAAGACACTTGTGTGCTTATCTTGTTGATCTGAAGAAGGCTTCGGCAGAAGAAATGCGCAAAAGTGTTCTTGCTAATTACTCAGCCTTCATACGTACATCCAAAGAGATTTCAGATCTTGAGGGAGAGCTGCTTTCCATGAGAAATCTTCTAAACACCCAGGCTGCTTTGGTTCATGGTTTAGCAGAAGGGTGCATGCTTAGTTCCATGATTAGTGGAAATGAAGATTCAGACATGGATGATTTACTAGCTGAAAAAACAGATATATCCAATACAGAAAAATGGCTAATAGGATATTTAGAAACCCTTGAAGTTCTATTAGCAGAGAAAAGAGTGGATGAAGCTATGACTGCATTGGACGAAGGAGAAAAAATGGCAAAAGAAATTAGTGAAGGGAAAACTTTAAGTCCAAGTTTATTCCAGGCATTGCAAGATGCCATTAATGAACACAGAAAAAAACTGGCTGATCAGCTAGCAGAAACTATCTGCCAGCCATCGACTCACAGTGCAGAGATTCGATCAACAGCATTGGCATTGAAAAATCTTGGGGACGGTCCTCGTGCTCATACATTACTACTAAATTCTCACCAAGAAACGTTGCAACGTAACATGAAAAACCTTCAATCCAGCAATTCTGGTGGAGTTGGAGCATTTACTGCTACCCTTTCTCAGCTTGTATTTTCAACCATTTCACAAGCAGCATCAGATTCTTTGTCAGTGTTTGCTGAAGAAGAACCTGCCTATACATCTGAGCTAGTAACTTGGGCAGTAACACAGGCTGAGAAATATGCTGTTCTCCTTAAGAAATGCATTCTTGCCTCTACAGCTGCGGCAGGAGGTTTGAGAGTTGCATCTGAATGTGTTCATGTTTGCATGAGTCACTGTTATCAGCTAGAGGCTAGTGGGCTGGCCCTTTCCCCAATCCTAATAAAATATTTTAGGCCCTTTGTCAAGCAAGCACTGAACACAAATTTGAGAAGAATTGAACAAAGTAGTTCTGCACTAGCTGCTGCAGATGATTGGTTTCTTGCTTATGCACCAACCAGCAGCAGGCATTCTGGCCTACCTCCATCTTCTTCTCACAGTAACTTAAGTTTTCAACCAAAGCTTTCAAGAAGTGCTCACAAATTCAACTCAATGGTTCAGGAGCTATTTGAAGATGTAGGACCTCTTGAAATACTACAATTGGACGTTCTTGCAGTTGAAGGCCTTCTACAAGTGTTCAACTTCTATGTCAATTTGCTAATAAATGCATTGCCAGGTTCAGTGGTAACTGAGAATCTGGAAGGGCACAAAATTGTTAAGATTGCTGAGACCGAAGAACAGCAGATAGCATTGCTGGCTAATGCAATGTTGCTGGCAGATGAGCTTCTCCCGCGTGCTGTCATCAAACTTTCAAATAGCACCAGAGGTGATGACTCTCACAGGAGAGGATCAGACAAACAGCGTGAACTGAAGAAAAGGCTCCAACGTGAAGTTGATCGCCTGCGGGACAGCTTTTGCCGGCAACATGCTCTTGAACTTATCTTCACAGAAGAAGGAGAAGCTCGTCTAAATGCATTAATATATTTGGGAATGGATGGTAATGTAGAACAACCTGAATGGTTTCCTTCTCCAATTTTTCAGGAGATTTTTGCAAAGCTTACGGATGTGGCAAGCATTGCAGCAGATCTGTTTGTGGGAAGGGAAAGATTTGCCACTGTTTTATTGATGAGACTCGCAGAAACAGTGATCCTGTGGCTTTCTGATGATCAAACCTTCTGGGAAGAGGTTGAGACAGGATCAACACCTTTAGGTCCCATCGGCCTTCAACAGCTTTATTTGGATATGCAATTTGTGATGATATTTTCATCCCAAGGCCGTTACTTATCTCGTCATTTGCATCAAGCTATTAAAAACATTATTGAAAGGGCTATTAATGCTGTTGCCGCTACAGGTCTGGATCCCAACAGTGTCTTGCCGGAGGATGAATGGTTTGTTGAAGTTTGCGAAATAGCTATAAAGATGTTAACTGGGAGAGCAGCCTTTGACAACGTAGAGGATGATGTTGCTAGCCCCACTTCATCTGTCCAAACATAA
Predicted protein sequences of Glyma01g04650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g04650.2 sequence type=predicted peptide gene model=Glyma01g04650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDQSPFLAQRGSVSSSLGNSAELDANLTLSDKLKVFKSSTFDPNNYVASKSRSMNEKEIRHLCAYLVDLKKASAEEMRKSVLANYSAFIRTSKEISDLEGELLSMRNLLNTQAALVHGLAEGCMLSSMISGNEDSDMDDLLAEKTDISNTEKWLIGYLETLEVLLAEKRVDEAMTALDEGEKMAKEISEGKTLSPSLFQALQDAINEHRKKLADQLAETICQPSTHSAEIRSTALALKNLGDGPRAHTLLLNSHQETLQRNMKNLQSSNSGGVGAFTATLSQLVFSTISQAASDSLSVFAEEEPAYTSELVTWAVTQAEKYAVLLKKCILASTAAAGGLRVASECVHVCMSHCYQLEASGLALSPILIKYFRPFVKQALNTNLRRIEQSSSALAAADDWFLAYAPTSSRHSGLPPSSSHSNLSFQPKLSRSAHKFNSMVQELFEDVGPLEILQLDVLAVEGLLQVFNFYVNLLINALPGSVVTENLEGHKIVKIAETEEQQIALLANAMLLADELLPRAVIKLSNSTRGDDSHRRGSDKQRELKKRLQREVDRLRDSFCRQHALELIFTEEGEARLNALIYLGMDGNVEQPEWFPSPIFQEIFAKLTDVASIAADLFVGRERFATVLLMRLAETVILWLSDDQTFWEEVETGSTPLGPIGLQQLYLDMQFVMIFSSQGRYLSRHLHQAIKNIIERAINAVAATGLDPNSVLPEDEWFVEVCEIAIKMLTGRAAFDNVEDDVASPTSSVQT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
