Glyma01g04623 - SoyBase

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Report for Sequence Feature Glyma01g04623

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4248629
stop:	4253094
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04623

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10417	AT	Annotation by Michelle Graham. TAIR10: Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens. \| chr1:3424616-3427457 REVERSE LENGTH=431	SoyBase	E_val: 2.00E-86	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9XIK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T10O24.2 n=1 Tax=Arabidopsis thaliana RepID=Q9XIK8_ARATH	SoyBase	E_val: 3.00E-18	ISS
UniRef100_UPI00023370F4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023370F4 related cluster n=1 Tax=unknown RepID=UPI00023370F4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04623

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g04623 not represented in the dataset	Glyma01g04623 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04623

Paralog	Evidence	Comments
Glyma02g02927	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04623 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g039400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04623

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g04623

Limit To All Plant Sequences

>Glyma01g04623.2   sequence type=transcript   gene model=Glyma01g04623   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGCTCAAGCTTTCGAAGCTGAAGCTCCAACTACAAGCCCTCGTCGCCGAAGTTCGTGATCTCAGGGACAGGGAGCGCTCCGCCACCGAGCAGCACCACCTTCTAATCCAGAAGCTGAAGCGGAACGAGGAAGAGTGCGGCAGAAAGATACAGGAATTGCAGGACGAGTTGGCTTCTGTAAAAGAGGAACGCCAGAAACTGGAGAGAAAGGTGATTTATCTTGAGAACGATAATGTGCTGCTTGAGAACAAGCAGAAAGAGTTGAAGGGAACGCTGAATAATTTACTTCAGTCTAGGGAAAACTTTGTGAATGCTTACGAGGAATCTACTTCTCAAATGAAACGTTCAATTGAAGCCAAAGATAGGATGCTCGGTGTACTTTCAGAGAAAATAAGCTCTTATGTAGCATTGTTTGATTCAATAGAGAAGGAGGCGTTTTCTATCAAGCAAATTGTGGATAAAGTCCAGAATGTTGTCAATGATAGAGAGGGCATTGTGGCCAGCTTGAGAAACAAAATGGATTGGGTCTCTGCATCTGAAAAAGAATTTGTTGAAAATATCTCTGATCTAAGAAATAAACTGGAAAACAATGAGGCTGAATTAAGAAGAAAGGATAGAATCATCTCAGAACTTGAAGCAAAGCTGGATGTGGCAAAAGTTTGCAACCACAACCTAGCTAAAATGGAAGATATTCAGAAAACTTTATCTGCAAAGGATGCAGAGATACAGAATTTAATTTCAGACAAAGAGGTTTTACATTATGAAGTTGGAAGCTTAAGACTTGTCTTACAGAGGATTCAGGATACTGTCACAAATATGAATGAAGAGGACAAAAGGTTATTCTCATCAATTTTGCAACATAAAGAAGCAATTGTAACGGATATGGAGATTGTAGATAACGGGATGGAAGATGTTGTTCAAAACAATGAAGAGAAGACTCAGGAACCTACTTGATTGCTCTCTTAAAGGCACAGTGGAAATGTTTTGGGCTGACGATGGATTGAGACCAAATGATCAACAGAATGGTTCACTACACAGCCATCTGCATCTCTGATAACTGGCGGACTGACATCCTATTTTGATTAAGTTGGATATTTAGCTCAAGTGGGCAGGAAGTATGAGATTGTACATGTAATGCCACTTGAAAGCATGGTTCGATTGTCAATTTTTTAAATTTTCTTACGATTGTTAAATTGAAGAGTAATATTCAATTATTCAATTTATTAGATCTTGAATTTTGATGAACTTTTTTTA

Coding sequences of Glyma01g04623

Limit To All Plant Sequences

>Glyma01g04623.1   sequence type=CDS   gene model=Glyma01g04623   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGCTCAAGCTTTCGAAGCTGAAGCTCCAACTACAAGCCCTCGTCGCCGAAGTTCGTGATCTCAGGGACAGGGAGCGCTCCGCCACCGAGCAGCACCACCTTCTAATCCAGAAGCTGAAGCGGAACGAGGAAGAGTGCGGCAGAAAGATACAGGAATTGCAGGACGAGTTGGCTTCTGTAAAAGAGGAACGCCAGAAACTGGAGAGAAAGGTGATTTATCTTGAGAACGATAATGTGCTGCTTGAGAACAAGCAGAAAGAGTTGAAGGGAACGCTGAATAATTTACTTCAGTCTAGGGAAAACTTTGTGAATGCTTACGAGGAATCTACTTCTCAAATGAAACGTTCAATTGAAGCCAAAGATAGGATGCTCGGTGTACTTTCAGAGAAAATAAGCTCTTATGTAGCATTGTTTGATTCAATAGAGAAGGAGGCGTTTTCTATCAAGCAAATTGTGGATAAAGTCCAGAATGTTGTCAATGATAGAGAGGGCATTGTGGCCAGCTTGAGAAACAAAATGGATTGGGTCTCTGCATCTGAAAAAGAATTTGTTGAAAATATCTCTGATCTAAGAAATAAACTGGAAAACAATGAGGCTGAATTAAGAAGAAAGGATAGAATCATCTCAGAACTTGAAGCAAAGCTGGATGTGGCAAAAGTTTGCAACCACAACCTAGCTAAAATGGAAGATATTCAGAAAACTTTATCTGCAAAGGATGCAGAGATACAGAATTTAATTTCAGACAAAGAGGTTTTACATTATGAAGTTGGAAGCTTAAGACTTGTCTTACAGAGGATTCAGGATACTGTCACAAATATGAATGAAGAGGACAAAAGGTTATTCTCATCAATTTTGCAACATAAAGAAGCAATTGTAACGGATATGGAGATTGTAGATAACGGGATGGAAGATGTTGTTCAAAACAATGAAGAGAAGACTCAGGAACCTACTTGA

>Glyma01g04623.2   sequence type=CDS   gene model=Glyma01g04623   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGCTCAAGCTTTCGAAGCTGAAGCTCCAACTACAAGCCCTCGTCGCCGAAGTTCGTGATCTCAGGGACAGGGAGCGCTCCGCCACCGAGCAGCACCACCTTCTAATCCAGAAGCTGAAGCGGAACGAGGAAGAGTGCGGCAGAAAGATACAGGAATTGCAGGACGAGTTGGCTTCTGTAAAAGAGGAACGCCAGAAACTGGAGAGAAAGGTGATTTATCTTGAGAACGATAATGTGCTGCTTGAGAACAAGCAGAAAGAGTTGAAGGGAACGCTGAATAATTTACTTCAGTCTAGGGAAAACTTTGTGAATGCTTACGAGGAATCTACTTCTCAAATGAAACGTTCAATTGAAGCCAAAGATAGGATGCTCGGTGTACTTTCAGAGAAAATAAGCTCTTATGTAGCATTGTTTGATTCAATAGAGAAGGAGGCGTTTTCTATCAAGCAAATTGTGGATAAAGTCCAGAATGTTGTCAATGATAGAGAGGGCATTGTGGCCAGCTTGAGAAACAAAATGGATTGGGTCTCTGCATCTGAAAAAGAATTTGTTGAAAATATCTCTGATCTAAGAAATAAACTGGAAAACAATGAGGCTGAATTAAGAAGAAAGGATAGAATCATCTCAGAACTTGAAGCAAAGCTGGATGTGGCAAAAGTTTGCAACCACAACCTAGCTAAAATGGAAGATATTCAGAAAACTTTATCTGCAAAGGATGCAGAGATACAGAATTTAATTTCAGACAAAGAGGTTTTACATTATGAAGTTGGAAGCTTAAGACTTGTCTTACAGAGGATTCAGGATACTGTCACAAATATGAATGAAGAGGACAAAAGGTTATTCTCATCAATTTTGCAACATAAAGAAGCAATTGTAACGGATATGGAGATTGTAGATAACGGGATGGAAGATGTTGTTCAAAACAATGAAGAGAAGACTCAGGAACCTACTTGA

Predicted protein sequences of Glyma01g04623

Limit To All Plant Sequences

>Glyma01g04623.1   sequence type=predicted peptide   gene model=Glyma01g04623   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELLKLSKLKLQLQALVAEVRDLRDRERSATEQHHLLIQKLKRNEEECGRKIQELQDELASVKEERQKLERKVIYLENDNVLLENKQKELKGTLNNLLQSRENFVNAYEESTSQMKRSIEAKDRMLGVLSEKISSYVALFDSIEKEAFSIKQIVDKVQNVVNDREGIVASLRNKMDWVSASEKEFVENISDLRNKLENNEAELRRKDRIISELEAKLDVAKVCNHNLAKMEDIQKTLSAKDAEIQNLISDKEVLHYEVGSLRLVLQRIQDTVTNMNEEDKRLFSSILQHKEAIVTDMEIVDNGMEDVVQNNEEKTQEPT*

>Glyma01g04623.2   sequence type=predicted peptide   gene model=Glyma01g04623   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELLKLSKLKLQLQALVAEVRDLRDRERSATEQHHLLIQKLKRNEEECGRKIQELQDELASVKEERQKLERKVIYLENDNVLLENKQKELKGTLNNLLQSRENFVNAYEESTSQMKRSIEAKDRMLGVLSEKISSYVALFDSIEKEAFSIKQIVDKVQNVVNDREGIVASLRNKMDWVSASEKEFVENISDLRNKLENNEAELRRKDRIISELEAKLDVAKVCNHNLAKMEDIQKTLSAKDAEIQNLISDKEVLHYEVGSLRLVLQRIQDTVTNMNEEDKRLFSSILQHKEAIVTDMEIVDNGMEDVVQNNEEKTQEPT*

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