Glyma01g04610 - SoyBase

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Report for Sequence Feature Glyma01g04610

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4217441
stop:	4221353
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59640	AT	Annotation by Michelle Graham. TAIR10: BIG PETAL P \| chr1:21909464-21911030 REVERSE LENGTH=264	SoyBase	E_val: 1.00E-89	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0009694	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0048441	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal development	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0048446	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal morphogenesis	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF7	Panther	CENTROMERE-BINDING PROTEIN 1, CBP-1	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7LEL6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH79 n=1 Tax=Medicago truncatula RepID=G7LEL6_MEDTR	SoyBase	E_val: 6.00E-102	ISS
UniRef100_I1J5H6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5H6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04610

Paralog	Evidence	Comments
Glyma02g02942	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g039200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g04610

Limit To All Plant Sequences

>Glyma01g04610.4   sequence type=transcript   gene model=Glyma01g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAAAGAAAAAGAGTAGTGACTTGGTTTTTGAGAGTCCCGAGATAATGGATCCGGCGGCGATGATGAACGGCGGCGCCAACCCGACGTCGTATCACCTGTCAGAGATCTGGCAGTTCCCGCCTCCCAACGCGCCAGACGAGCTGGGACTCAGAAGGCCCCACTTCACCCACGGCTTCGCGGACTTCGCCCCGGATCCGACCCGAGACGCCGTCCCGGGTCGCGACCCGGCCAGCATTGCCCAGAAGAAGCGCCGCGACGCCTCGGCCGAGGAGGAGGAATCCGCTAAGGGCGCCTCCACCACCAATGCCGTGAATGAGGGGGGTGGTGTTGGTGATGGGAAACGGGTCAAGACGAGTGAGAGTGGGAAAGGTGAAGGAGAAACCAGTTCAGGAAAGCTTGCGGAGCAAAGTGGTAAGCCACCTTCGGAGCCTCCAAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGACGCGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATATAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGACTGGCCCCCAGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATGCCGTTTGCTTCCCAAGCTACAAGAGAGTATAGCCGAGGTTCATCGCCAGAATGGTTACATATGCAGGTTGGAGGTGGTTATGAAAGAGCAACGTAGTCTTTGAAATCCCATCACCTGATAATAAATGCATATAGGATCATTAATCTCTCCATCAGAGCTCCCATAAATCATATACTCAAGGTGTTGTTGTTTAGTCCTATAGACACCTCATTCCCTGTTTTCTACAAGAGGCATGGAGCTGTGGTTTGTTTCCACAGGATCACTAGTTAGTACTCAAGCAACTCCATTTGTTAGTGTGTTGGAAAATGAATTCATTTACCCAATATGTAGTTTAGTATGCTGATACTCTTCATTCATAACCTTTAAAATGATAGTTATTATTCTTGTAAAAGAATGCTGCTTGTCCTGAATACATAAAGGCTTACATATTGTGTAATAGTATCAACATTGTTGTTTGTCTGTGAAGCTGTGTTGAATAAATTAAGCCCATGTGATTTTGTTAAACTTTGTTCTTTAGTTCCTTTGAGCGCATACAAAGAACTTAATAG

Coding sequences of Glyma01g04610

Limit To All Plant Sequences

>Glyma01g04610.3   sequence type=CDS   gene model=Glyma01g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGGCGGCGATGATGAACGGCGGCGCCAACCCGACGTCGTATCACCTGTCAGAGATCTGGCAGTTCCCGCCTCCCAACGCGCCAGACGAGCTGGGACTCAGAAGGCCCCACTTCACCCACGGCTTCGCGGACTTCGCCCCGGATCCGACCCGAGACGCCGTCCCGGGTCGCGACCCGGCCAGCATTGCCCAGAAGAAGCGCCGCGACGCCTCGGCCGAGGAGGAGGAATCCGCTAAGGGCGCCTCCACCACCAATGCCGTGAATGAGGGGGGTGGTGTTGGTGATGGGAAACGGGTCAAGACGAGTGAGAGTGGGAAAGGTGAAGGAGAAACCAGTTCAGGAAAGCTTGCGGAGCAAAGTGGTAAGCCACCTTCGGAGCCTCCAAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGACGCGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATATAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGACTGGCCCCCAGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATGCCGTTTGCTTCCCAAGCTACAAGAGAGTATAGCCGAGGTTCATCGCCAGAATGGTTACATATGCAGGTTGGAGGTGGTTATGAAAGAGCAACGTAG

>Glyma01g04610.4   sequence type=CDS   gene model=Glyma01g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGGCGGCGATGATGAACGGCGGCGCCAACCCGACGTCGTATCACCTGTCAGAGATCTGGCAGTTCCCGCCTCCCAACGCGCCAGACGAGCTGGGACTCAGAAGGCCCCACTTCACCCACGGCTTCGCGGACTTCGCCCCGGATCCGACCCGAGACGCCGTCCCGGGTCGCGACCCGGCCAGCATTGCCCAGAAGAAGCGCCGCGACGCCTCGGCCGAGGAGGAGGAATCCGCTAAGGGCGCCTCCACCACCAATGCCGTGAATGAGGGGGGTGGTGTTGGTGATGGGAAACGGGTCAAGACGAGTGAGAGTGGGAAAGGTGAAGGAGAAACCAGTTCAGGAAAGCTTGCGGAGCAAAGTGGTAAGCCACCTTCGGAGCCTCCAAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGACGCGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATATAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGACTGGCCCCCAGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATGCCGTTTGCTTCCCAAGCTACAAGAGAGTATAGCCGAGGTTCATCGCCAGAATGGTTACATATGCAGGTTGGAGGTGGTTATGAAAGAGCAACGTAG

Predicted protein sequences of Glyma01g04610

Limit To All Plant Sequences

>Glyma01g04610.3   sequence type=predicted peptide   gene model=Glyma01g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPAAMMNGGANPTSYHLSEIWQFPPPNAPDELGLRRPHFTHGFADFAPDPTRDAVPGRDPASIAQKKRRDASAEEEESAKGASTTNAVNEGGGVGDGKRVKTSESGKGEGETSSGKLAEQSGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLAPRIEVFPPKDFDQQTFDTTGMPFASQATREYSRGSSPEWLHMQVGGGYERAT*

>Glyma01g04610.4   sequence type=predicted peptide   gene model=Glyma01g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPAAMMNGGANPTSYHLSEIWQFPPPNAPDELGLRRPHFTHGFADFAPDPTRDAVPGRDPASIAQKKRRDASAEEEESAKGASTTNAVNEGGGVGDGKRVKTSESGKGEGETSSGKLAEQSGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLAPRIEVFPPKDFDQQTFDTTGMPFASQATREYSRGSSPEWLHMQVGGGYERAT*

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