Glyma01g04570 - SoyBase

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Report for Sequence Feature Glyma01g04570

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4140495
stop:	4144862
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10430	AT	Annotation by Michelle Graham. TAIR10: protein phosphatase 2A-2 \| chr1:3428705-3430437 REVERSE LENGTH=306	SoyBase	E_val: 0	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009903	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast avoidance movement	SoyBase	N/A	ISS
GO:0034613	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein localization	SoyBase	N/A	ISS
GO:0005623	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG0371	KOG	Serine/threonine protein phosphatase 2A, catalytic subunit	JGI		ISS
PTHR11668	Panther	SERINE/THREONINE PROTEIN PHOSPHATASE	JGI		ISS
PTHR11668:SF21	Panther	CALCINEURIN 1A	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_I1J5H1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=I1J5H1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1J5H1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=I1J5H1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04570

Paralog	Evidence	Comments
Glyma02g02990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g038800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g04570

Limit To All Plant Sequences

>Glyma01g04570.2   sequence type=transcript   gene model=Glyma01g04570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTTTTTGTGTTTTGCGCACACCAAATTGAAAAAAAAAAATAACAAGGAGCGAAACAAAGAAGAAAGAAAAGAAAAGAGAAAAGGACAGAAACAAACAGACGCAGAGCGCGGAACCAAATGAAATGATTGAGAAGAGAGCGAAGAAAAAAAACAGAGCCAAACCAAACCCCACCGTCCCCGAAACGGTTCGTTTTGCCCTTCTTCGGAACCCTCCCTTCCGCGCCGCTGCTGCTGCTCCGGTCGCCGTCGGCGATTCTCCGGTAACCGAACACCATCGATCCGTCAGGAGCCTCGGATCTCGGATCTGAGCGAAACGAATCGAAACGAAACGAAACGATGCCGTCTCATGCGGATCTGGACCGGCAGATCGAGCATCTGATGGAGTGCAAGCCTCTGCCGGAAGCCGATGTGAAGGCGCTGTGCGATCAGGCGAGAGCGATTCTCGTGGAGGAGTGGAACGTTCAGCCGGTGAAGTGCCCCGTCACCATCTGCGGCGACATTCACGGCCAGTTCTACGATCTCATCGAGCTCTTTCGGATAGGAGGAAACGCTCCCGATACTAATTACCTCTTTATGGGCGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTCACGCTTTTGGTGGCCTTGAAAGTTCGTTATAGAGATAGAATTACAATCCTTAGGGGAAATCATGAGAGCCGTCAAATCACTCAAGTGTATGGCTTCTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTATCCTTGATATCTAGAGCTCACCAGCTTGTCATGGAAGGATTCAATTGGTGCCAGGTGACTGACTGATCTAATATTTTGACTCAGTACCGTTTAAGTATTGGTTTCTTTCATTTTAAGGATACCCATTACATTATATGTATCGACATTGACTTTTATTTTTGATGAATCTTTAAGGACAAGAATGTGGTGACTGTTTTTAGTGCACCCAATTACTGTTACCGATGTGGGAACATGGCTGCCATACTAGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCCCGACAAATTGAGCCCGACACCACACGAAAGACACCAGATTATTTTTTGTAACTTCATATAACCCTTTGTTTGTAAGCTACTGCTTTATGCTGTTACTGTAGATGTGTCTTTAAGGAGAGAAGAGTTTCACTGTTTAAGTGGGACGGTTATCATCAACATAATTCTTTCTTTTGGAGTTTGTCTGCTGTTGCTGCTGCTGCCGTCTTATTTGGACAAGAAACAAATAGAAATTGACACAATTGGTGTTTGTATATTTTTGATAGGAGGAAGCGGCAATAACATGATATATCATGTGCTGTAATTTTTTCTTAAATTAAATCTCAAGTTAGAGAGCAGATTTTTGAGTTCTGACCATCATGTTCATTTGAGACTGTTGATGGTGACAGATGCAGGTGTTGATTTTTTTCTTCTTTTTCTTATTTTATTATCGAATGATATGATATTTTAGGGGTGGAGGGTTGATTGGAAATGGTTGCTTCGAGAAATAGGGAGCTTGGGCTGTGCTTTTTTTTTT

Coding sequences of Glyma01g04570

Limit To All Plant Sequences

>Glyma01g04570.1   sequence type=CDS   gene model=Glyma01g04570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTCTCATGCGGATCTGGACCGGCAGATCGAGCATCTGATGGAGTGCAAGCCTCTGCCGGAAGCCGATGTGAAGGCGCTGTGCGATCAGGCGAGAGCGATTCTCGTGGAGGAGTGGAACGTTCAGCCGGTGAAGTGCCCCGTCACCATCTGCGGCGACATTCACGGCCAGTTCTACGATCTCATCGAGCTCTTTCGGATAGGAGGAAACGCTCCCGATACTAATTACCTCTTTATGGGCGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTCACGCTTTTGGTGGCCTTGAAAGTTCGTTATAGAGATAGAATTACAATCCTTAGGGGAAATCATGAGAGCCGTCAAATCACTCAAGTGTATGGCTTCTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTATCCTTGATATCTAGAGCTCACCAGCTTGTCATGGAAGGATTCAATTGGTGCCAGGACAAGAATGTGGTGACTGTTTTTAGTGCACCCAATTACTGTTACCGATGTGGGAACATGGCTGCCATACTAGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCCCGACAAATTGAGCCCGACACCACACGAAAGACACCAGATTATTTTTTGTAA

>Glyma01g04570.2   sequence type=CDS   gene model=Glyma01g04570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTCTCATGCGGATCTGGACCGGCAGATCGAGCATCTGATGGAGTGCAAGCCTCTGCCGGAAGCCGATGTGAAGGCGCTGTGCGATCAGGCGAGAGCGATTCTCGTGGAGGAGTGGAACGTTCAGCCGGTGAAGTGCCCCGTCACCATCTGCGGCGACATTCACGGCCAGTTCTACGATCTCATCGAGCTCTTTCGGATAGGAGGAAACGCTCCCGATACTAATTACCTCTTTATGGGCGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTCACGCTTTTGGTGGCCTTGAAAGTTCGTTATAGAGATAGAATTACAATCCTTAGGGGAAATCATGAGAGCCGTCAAATCACTCAAGTGTATGGCTTCTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTATCCTTGATATCTAGAGCTCACCAGCTTGTCATGGAAGGATTCAATTGGTGCCAGGTGACTGACTGA

Predicted protein sequences of Glyma01g04570

Limit To All Plant Sequences

>Glyma01g04570.1   sequence type=predicted peptide   gene model=Glyma01g04570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSHADLDRQIEHLMECKPLPEADVKALCDQARAILVEEWNVQPVKCPVTICGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL*

>Glyma01g04570.2   sequence type=predicted peptide   gene model=Glyma01g04570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSHADLDRQIEHLMECKPLPEADVKALCDQARAILVEEWNVQPVKCPVTICGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGFNWCQVTD*

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