Glyma01g04560 - SoyBase

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Report for Sequence Feature Glyma01g04560

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4134769
stop:	4138744
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69980	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:26356559-26357647 REVERSE LENGTH=205	SoyBase	E_val: 6.00E-49	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
UniRef100_I1J5H0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5H0_SOYBN	SoyBase	E_val: 4.00E-160	ISS
UniRef100_O04546	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F20P5.28 protein n=1 Tax=Arabidopsis thaliana RepID=O04546_ARATH	SoyBase	E_val: 3.00E-33	ISS

Expression Patterns of Glyma01g04560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04560

Paralog	Evidence	Comments
Glyma02g03000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g038700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g04560

Limit To All Plant Sequences

>Glyma01g04560.3   sequence type=transcript   gene model=Glyma01g04560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGGAGTGAGATGATGGAGCCATGCTGAGCTATCAATTCAAGAAGTCTATATGACGAAGCTGAACGCAGAAGAATGATATTATTTGGAACGAGACAGTGACTGCTTTTTGCAAATGGTTTCAAATCCAGGGAAAGAGAGAAGAGCAAAGACACAGAGTAAGCAATGAAATTTCCAAATTCCCAATTGTTTTTTCCACTCTTCTTCTTCTTCTTCTTCGCCTTTACTCCCTTTCGCGCTTTAGGGCAGCAAACGGATTGGAACAGCGAAGAGACTCAACATGGAAATGGGGTTCGCCGCAGAGTTCTTCTGAGTTTCAAAGAAAAGCCCTCAGGAAGTAACGTTACCTTTGAATGTGCTCCTTCGGGTCCCTGTGTCCCCTGCCTCTACTCTGAGAAGGGTGATGAGAAATATCGGTGCAGTGAGACTGGCTACCGAATTCCATTCAAATGTGTAGAGATTAAAGACTCAACGAAGGATGCAAAGAAAACAAAGTCTCAAAAAGGTCGGTTGTCTTTGGAAATTTCTGATGGTATTGCAGAATCTCATATAGTGTCACATGTTGCTGGAGAAATCAATCCTTCACAATCACATAGAAGATTAGTGGATGATTCATTGTCTTCAGATAATAGTTCACAGGCTTATATCACTTATAGAAGCTGTATAACCCCAGTTAATGAAGAAAAGTTGTCATTGCTTAACTTTGAGGGGTTGGTGATTTTTTTGTTACTAATCAGTGGATCAATCATATACTTGAGAAAAAAAAAGGCTGCATCCATGTCTGGTTATGTAGCAGGAAGGGGTCAAAACAACTCTCGATTCTGAAATTGACGCCTAATGAATGATGACATTTGTACTCCATATTGATTGTAATATAGCCCTAATGTTGGTATTTAGTGGTCTCCTTTGTATTTTTGTAGTGATTTAAATGTAGTATAGTTTTACTGGCCTACGGCATCTTTTGCTCTTATCAAGTCATGGATGGACCACGTTAGTCATTATTATTTATTGTATTTTGAGGCCATATAGTTTGGGTCAATTTTGGCTAATTTATTGGAAGATAGGATTTTTAGGATTTTATTTTTTTCATCAAATCAGAACTTGTCTTGTATAAGTATTTTATATTTATTTTTATGTCTTCTCAAATGTTATTGTCAAGATTTTTTTGTTGTTGAGAGGGGTGTAAAGATTGCTATACTATCAACTTATTAGAAATTCTC

Coding sequences of Glyma01g04560

Limit To All Plant Sequences

>Glyma01g04560.2   sequence type=CDS   gene model=Glyma01g04560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTTCCAAATTCCCAATTGTTTTTTCCACTCTTCTTCTTCTTCTTCTTCGCCTTTACTCCCTTTCGCGCTTTAGGGCAGCAAACGGATTGGAACAGCGAAGAGACTCAACATGGAAATGGGGTTCGCCGCAGAGTTCTTCTGAGTTTCAAAGAAAAGCCCTCAGGAAGTAACGTTACCTTTGAATGTGCTCCTTCGGGTCCCTGTGTCCCCTGCCTCTACTCTGAGAAGGGTGATGAGAAATATCGGTGCAGTGAGACTGGCTACCGAATTCCATTCAAATGTGTAGAGATTAAAGACTCAACGAAGGATGCAAAGAAAACAAAGTCTCAAAAAGGTCGGTTGTCTTTGGAAATTTCTGATGGTATTGCAGAATCTCATATAGTGTCACATGTTGCTGGAGAAATCAATCCTTCACAATCACATAGAAGATTAGTGGATGATTCATTGTCTTCAGATAATAGTTCACAGGCTTATATCACTTATAGAAGCTGTATAACCCCAGTTAATGAAGAAAAGTTGTCATTGCTTAACTTTGAGGGGTTGGTGATTTTTTTGTTACTAATCAGTGGATCAATCATATACTTGAGAAAAAAAAAGGCTGCATCCATGTCTGGTTATGTAGCAGGAAGGGGTCAAAACAACTCTCGATTCTGA

>Glyma01g04560.3   sequence type=CDS   gene model=Glyma01g04560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTTCCAAATTCCCAATTGTTTTTTCCACTCTTCTTCTTCTTCTTCTTCGCCTTTACTCCCTTTCGCGCTTTAGGGCAGCAAACGGATTGGAACAGCGAAGAGACTCAACATGGAAATGGGGTTCGCCGCAGAGTTCTTCTGAGTTTCAAAGAAAAGCCCTCAGGAAGTAACGTTACCTTTGAATGTGCTCCTTCGGGTCCCTGTGTCCCCTGCCTCTACTCTGAGAAGGGTGATGAGAAATATCGGTGCAGTGAGACTGGCTACCGAATTCCATTCAAATGTGTAGAGATTAAAGACTCAACGAAGGATGCAAAGAAAACAAAGTCTCAAAAAGGTCGGTTGTCTTTGGAAATTTCTGATGGTATTGCAGAATCTCATATAGTGTCACATGTTGCTGGAGAAATCAATCCTTCACAATCACATAGAAGATTAGTGGATGATTCATTGTCTTCAGATAATAGTTCACAGGCTTATATCACTTATAGAAGCTGTATAACCCCAGTTAATGAAGAAAAGTTGTCATTGCTTAACTTTGAGGGGTTGGTGATTTTTTTGTTACTAATCAGTGGATCAATCATATACTTGAGAAAAAAAAAGGCTGCATCCATGTCTGGTTATGTAGCAGGAAGGGGTCAAAACAACTCTCGATTCTGA

Predicted protein sequences of Glyma01g04560

Limit To All Plant Sequences

>Glyma01g04560.2   sequence type=predicted peptide   gene model=Glyma01g04560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFPNSQLFFPLFFFFFFAFTPFRALGQQTDWNSEETQHGNGVRRRVLLSFKEKPSGSNVTFECAPSGPCVPCLYSEKGDEKYRCSETGYRIPFKCVEIKDSTKDAKKTKSQKGRLSLEISDGIAESHIVSHVAGEINPSQSHRRLVDDSLSSDNSSQAYITYRSCITPVNEEKLSLLNFEGLVIFLLLISGSIIYLRKKKAASMSGYVAGRGQNNSRF*

>Glyma01g04560.3   sequence type=predicted peptide   gene model=Glyma01g04560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFPNSQLFFPLFFFFFFAFTPFRALGQQTDWNSEETQHGNGVRRRVLLSFKEKPSGSNVTFECAPSGPCVPCLYSEKGDEKYRCSETGYRIPFKCVEIKDSTKDAKKTKSQKGRLSLEISDGIAESHIVSHVAGEINPSQSHRRLVDDSLSSDNSSQAYITYRSCITPVNEEKLSLLNFEGLVIFLLLISGSIIYLRKKKAASMSGYVAGRGQNNSRF*

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