Glyma01g04500 - SoyBase

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Report for Sequence Feature Glyma01g04500

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4070067
stop:	4074636
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27210	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr1:9455669-9457917 REVERSE LENGTH=625	SoyBase	E_val: 3.00E-175	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF02985	PFAM	HEAT repeat	JGI		ISS
UniRef100_G7K6Y7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Microtubule-associated protein TORTIFOLIA1 n=1 Tax=Medicago truncatula RepID=G7K6Y7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023370EE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023370EE related cluster n=1 Tax=unknown RepID=UPI00023370EE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04500

Paralog	Evidence	Comments
Glyma02g03050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g038400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g04500

Limit To All Plant Sequences

>Glyma01g04500.1   sequence type=CDS   gene model=Glyma01g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCCGGCGTCACTCACTAAGCGGCCCGCCACCACTCTCCGGCACCGAGTCGACTCATAACCTCCGACAGCGAGTCATCACGTGCCTTAACAAACTCTCCGACCGCGACACTCTCGCCGGCGCCGCCGCGGAACTCGAGTCCATCGCCAGAACCCTAAACCATGACTCGTTCTCCTCCTTCCTCTCTTGCATTCACAACACTGACTCCTCTTCCAAATCACCGGTTCGAAAACAATGCGTTCATCTCTTAAACGTTCTCTCGCGCTTCCACGGCGAAGCGCTTTCGCCTTTCATTTCGAAAATGCTCGCCACCGTGCTCCGGCGGCTCCGCGACACCGACTCCGCCGTGCGATCCGAGTGCGTGGACGCCGTGGCGTCGATGTCGTCGCGGATCACGCGGCCGCCGTTCTCCGCCGCGTTCCTGCGGCCGCTCATGGACGCACTGGCGCAGGAGCAGGAAGCCAACGCGCAGATCGGCGCCGCGCTGTGCCTCGCGGCGGCGGTCGAGGCGTCGCCGGACCCCGACGCGGAGGCCCTCCGCCGGAGCGCGCTGCCGCGACTCGGGAAGCTCGTGAAGAGCGACGCGTGCAGGGCGCGGGCGGCACTGCTGGTACTGATCGGAAGCGTGGTCGGTGCTGGCGGCGCGTCGAGCCGCGGCGCGGTGAACTGGCTCGTGCCGTGCCTCGTGGAGTTCCTCGGCAGTGAGGACTGGACGGTGAGGAAGGCCGCGGCGGAGGCGCTGGCGAAGGTGGCTTCCGTGGAGAGAGATTTGGCGTCGCAGCATAAGGCTCTGTGTTTGGATTCGTTGCAGAATCGGAGATTTGATAAGATCAAAGTGGTTCGGGAGACTATGAATCGTGCATTGGAGACGTGGAAGGAGGTAACTGAAGATGCTCCTGCTTCGCAAGTAAAGTCTGAATGTGCTTCTGTTGGCACAGATGATGGTAAAAGTCAGTGTGTCACTAAAAGTTCACCCAATGTTGGCTTTAAGTCTTCTTCTAAAACAGTCATTGCCAACAGGTCCCCTGCATCTGTGGTTTCATTCATGTCGTCCATTAAAAGAGAGAGTTCTCTAAAGAGTAATGAGAGGCATTTGAGAATGGGGACAATGCATCAGCAGGGTCAGGAGAAATCCTCCGATGAGAAACTTGAAACTCCATTTTTGGGTTCCTCCCACTCAAATATGTCTAGGGAAGATGATATTAAAAGGTGTAATGTTGAAGTTTCTAAGCCACCCCCATATCAAAATCAAAACGGGGTAAATTCGAGGGCAGAGATAAAGCGTGTTCTCTTTAGCAAGATGTCTGATGAAAAAATGAGGAGATTCAGTGGTTCAAAATCTCGCGTGGTTCCATGTATTGATGATGATGATCTTGATGCAGATGTTATTGTCAACAATGCAAATGAAGTTTGTGAGAGCCCACAAGATGTTGAGGAGTTTGCTTTGATCCGTGAACAACTTCTTCAAATTGAAAACCAGCAATCAAATCTATTAGACCTCCTCCAGAGATTTATTGGAAGCTCCCAAAGTGGTATGAATTCTCTGGAGTCACGTGTACATGGCCTAGAGATGGCCCTGGATGAAATATCACATGATTTGGCAGTTTCAGGTGGCAGGGTTTCCAATATTGATGCCACAGAAGACACTTGTTGCAAGCTACCTGGTACTGACTTTTTGAGTTCTAAATTCTGGAAGAAGACAGAAGGTCGTTATTCCACATCAAGGTTCTCTTTAGGAAGCATACCATCAACAGATGCTGTGCATATTGCAACCAATAAAGATGGAAAAAGAGAAATATTAACTGCAAATAACAATAGATTGCAACATGGTAAGGGTGGATATTTTGTAAACCCATTGGCAGAAGTTCAAAGCGATTTGAAAGGGCATCATACATATAAACTTTCTAAAAACTTATTCCAAGATGCTGTGAGGAGATATGATGGCATTCAACCAGCTACTGAATCACTCAGGAACCAGAATATCAGGTCATCCGTGTAG

Predicted protein sequences of Glyma01g04500

Limit To All Plant Sequences

>Glyma01g04500.1   sequence type=predicted peptide   gene model=Glyma01g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRRHSLSGPPPLSGTESTHNLRQRVITCLNKLSDRDTLAGAAAELESIARTLNHDSFSSFLSCIHNTDSSSKSPVRKQCVHLLNVLSRFHGEALSPFISKMLATVLRRLRDTDSAVRSECVDAVASMSSRITRPPFSAAFLRPLMDALAQEQEANAQIGAALCLAAAVEASPDPDAEALRRSALPRLGKLVKSDACRARAALLVLIGSVVGAGGASSRGAVNWLVPCLVEFLGSEDWTVRKAAAEALAKVASVERDLASQHKALCLDSLQNRRFDKIKVVRETMNRALETWKEVTEDAPASQVKSECASVGTDDGKSQCVTKSSPNVGFKSSSKTVIANRSPASVVSFMSSIKRESSLKSNERHLRMGTMHQQGQEKSSDEKLETPFLGSSHSNMSREDDIKRCNVEVSKPPPYQNQNGVNSRAEIKRVLFSKMSDEKMRRFSGSKSRVVPCIDDDDLDADVIVNNANEVCESPQDVEEFALIREQLLQIENQQSNLLDLLQRFIGSSQSGMNSLESRVHGLEMALDEISHDLAVSGGRVSNIDATEDTCCKLPGTDFLSSKFWKKTEGRYSTSRFSLGSIPSTDAVHIATNKDGKREILTANNNRLQHGKGGYFVNPLAEVQSDLKGHHTYKLSKNLFQDAVRRYDGIQPATESLRNQNIRSSV*

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