Glyma01g04492 - SoyBase

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Report for Sequence Feature Glyma01g04492

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4024328
stop:	4035566
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04492

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70060	AT	Annotation by Michelle Graham. TAIR10: SIN3-like 4 \| chr1:26383789-26389568 FORWARD LENGTH=1326	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048440	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG4204	KOG	Histone deacetylase complex, SIN3 component	JGI		ISS
PTHR12346	Panther	SIN3B-RELATED	JGI		ISS
PF02671	PFAM	Paired amphipathic helix repeat	JGI		ISS
PF08295	PFAM	Histone deacetylase (HDAC) interacting	JGI		ISS
UniRef100_D9ZJF7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJF7_MALDO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337612	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337612 related cluster n=1 Tax=unknown RepID=UPI0002337612	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04492

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g04492 not represented in the dataset	Glyma01g04492 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04492

Paralog	Evidence	Comments
Glyma02g03060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04492 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g038300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04492

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g04492

Limit To All Plant Sequences

>Glyma01g04492.1   sequence type=CDS   gene model=Glyma01g04492   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGGTCCAGAGATGAAGTTCTCACGAGTTGTTCTCAATTGAAACGGCCTGTGTTGTCTTCACGAGGAGAAGCGTCTGGGCAACCGCAGATGATGAATGGAGGTGCTCAGAAACTGACAACTAATGATGCCCTTGCATATCTCAAGGCAGTGAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACTGTGGGTGTCATTGCAAGAGTGAAGGAACTGTTTAAAGGCCACAGAGATCTTATATTAGGATTTAACACCTTCTTGCCTAAGGGTTACGAAATCACACTTCCATCAGAGGATGATCAACCTGCCCCAAAGAAACCCGTTGAATTTGAAGAGGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGTGATGATCATGTGTATAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAGACAAATCTATTACTGAGGTCTACCAGGAGGTTGCTGCTATTTTTCAGGACCACCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGGAATTCTATGCTTCGCGATAGGAGCTCTGCAATGCCAACAATACGACAATTGCACGTTGAAAAGCGAGAACGGACCATTGTTTCACATGGTGATCATGACCCCAGTGTTGATCGTCCTGACCCAGATCATGACAGGGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGTGTGGAGAAGGAAAAGGAACGTAGAGAAGATAGAGACAAGAGAGAACGTGAAAGGGATGATAGAGATTATGAGCATGATGGGGCTCGAGATAGGGAGCGATTCTCTCACAAACGGAATCGTAAGGCTGAAGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAAAATTTTGGTGTGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTTGCTTTCTGTGAAAAGGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTGCATATCTACAGCAGGGAAATAATTACCCGACATGAGTTGCAGTCATTGGTGGGTGATTTACTGGGAAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTTCAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATAAAGGTTGAAGACAAGGATAGAGATCAGGATAGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGACAAATCTACTGCGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGAGAAGTATTTATCCAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGCACTCCTAGTTACCGTCTCTTACCGAAAAATTACCCAATACCTGTAGCTAGCCAGAAAACAGAACTTGGTGCTGAGGTGTTGAATGATTACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAGTAATATAATTAAAGGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAACCTTAGGTGTATTGAGCGATTATATGGTGACCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGGTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACTAAAAGCTTGAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATCTGTGAAAAGAAACGCAAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGGCGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCCAGATATTCATGAAGATTTATATCAGCTCATAAAATATTCCTGTGGAGAAATTTGCACAACTGAACACGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTATTCCTTCTCGGCCCCAGTGTGCAGAGGATACAGAAGATGTTGTCAAGGTTAAGAATAATTGTGTCCTAAATGACACAGCAACTGTTGCTGAGAGTGACTGTAGCCCTGTTGTGGGTGCTACCATAATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGAGTGTATGCCATTAGATCAATCAACTTCTAGTAAAGCATGGCAGTCAAATGGTGATAGTGGGGTTAGAGAGGATAGGTATCTTGATGACCATGCATTGCGTAAAACTGAAACTTTGGGCAGCAATACACAGCATGGTAAAATGAATAGTATTGCATTCACACCTGATGAACCATCAGGATTTAACAATAAGCAAGACCAGTCCAGCGAACGGTTAGTGAATGCAAATGTCTCACCAGCATCTGGAATGGAGCAAAGCAATGGAAGGACAAACATAGATAATTTGTCGGGACTCACTGCCACTCCAACAAGACCTGGTAATGCTTCTGTTGAGGGAGGACTTGATATACCGTCATCAGAGGGTGGTGATTCTACAAGACTGGGTACATCAACAAATGGGGCCATCACTGGAGGCACCAAAGTTCACCGATACCAAGAGGAATCAGTTCGACCCTTCAAAAATGAAAGAGAAGAGGTGCATAAAGGAAAAGATGGTGGTGTGAGTCGGCAATACCAAAATAGGCACGGGGAAGAAGTTTGTGGTGAAACTAGAGGAGAAAACGATGCTGATGCTGATGATGAAGGTGAAGAAAGCCATCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCACGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCCCATGATGTTGAAGGAGATGGAATGTCATTGCCATATTCTGAACGCTTTCTACTAACTGTGAAGCCTCTAGCAAAGCATGTTCCTCCAATGTTACATGAGAAGGACAGGAATTCACGAGTTTTCTATGGAAATGATTCCTTTTATGTGCTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATAAACTCATCATCTGCTGATAGGAAATGGAAGGCTTCAAGTGATACAAGCTCCACTGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAATCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAATAAGCTTTTACAACTATATGCATATGAGAAATCGAGAAAACCCGGAAAATTTGTTGACATCGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGACGAGAACATATATCGTATTGAATATTCACCTGGACCAATGAAACTGTCTATTCAACTGATGGACTCTGGACATGATAAACCTGAGGTGACTGCTGTGTCAATGGACCCTAATTTTTCAACCTATCTACACTATGACTTCCTGTCTGTCGTCTCTGACAAAAAACAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGTAGATATGCCAGTAATGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTCTCATATGTTTTAGATACCGAAGACTTTTTGTTTCGGATAAGAAGGAAAAGAAGAGCCTTGCGTCTGAAGAGTTCAGGTGCTCACGAACAGGCACAGTCTTCAAACATTTGTTCAAGCAGAGTACAACGATTCCGCAATTTGTTTTCCATTACATGA

Predicted protein sequences of Glyma01g04492

Limit To All Plant Sequences

>Glyma01g04492.1   sequence type=predicted peptide   gene model=Glyma01g04492   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRSRDEVLTSCSQLKRPVLSSRGEASGQPQMMNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDDQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKEDKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSMLRDRSSAMPTIRQLHVEKRERTIVSHGDHDPSVDRPDPDHDRGLLRIEKERRRVEKEKERREDRDKRERERDDRDYEHDGARDRERFSHKRNRKAEDSGAEPLLDADENFGVRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQIKVEDKDRDQDRDRDRYRDDGMKERDREFRERDKSTAIANKDVLGSKMSLYPSKEKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQKTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINSNIIKGDSPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWGEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEICEKKRKDDVLLAIAAGNRRPILPNLEFKYSDPDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCIPSRPQCAEDTEDVVKVKNNCVLNDTATVAESDCSPVVGATIMNPKHINVSRNGDECMPLDQSTSSKAWQSNGDSGVREDRYLDDHALRKTETLGSNTQHGKMNSIAFTPDEPSGFNNKQDQSSERLVNANVSPASGMEQSNGRTNIDNLSGLTATPTRPGNASVEGGLDIPSSEGGDSTRLGTSTNGAITGGTKVHRYQEESVRPFKNEREEVHKGKDGGVSRQYQNRHGEEVCGETRGENDADADDEGEESHHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVKPLAKHVPPMLHEKDRNSRVFYGNDSFYVLLRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPGPMKLSIQLMDSGHDKPEVTAVSMDPNFSTYLHYDFLSVVSDKKQKSGIFLKRNKRRYASNDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLFRIRRKRRALRLKSSGAHEQAQSSNICSSRVQRFRNLFSIT*

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