SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G70070 | AT | Annotation by Michelle Graham. TAIR10: DEAD/DEAH box helicase, putative | chr1:26390016-26394148 REVERSE LENGTH=1171 | SoyBase | E_val: 0 | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010497 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plasmodesmata-mediated intercellular transport | SoyBase | N/A | ISS |
| GO:0016441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0010494 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic stress granule | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003724 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA helicase activity | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| GO:0016818 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | SoyBase | N/A | ISS |
| KOG0947 | KOG | Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily | JGI | ISS | |
| PTHR11752 | Panther | HELICASE SKI2W | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF08148 | PFAM | DSHCT (NUC185) domain | JGI | ISS | |
| UniRef100_G7K5N2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase DOB1 n=1 Tax=Medicago truncatula RepID=G7K5N2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7K5N2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: ATP-dependent RNA helicase DOB1 n=1 Tax=Medicago truncatula RepID=G7K5N2_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma01g04476 not represented in the dataset |
Glyma01g04476 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g03070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g038100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g04476.1 sequence type=CDS gene model=Glyma01g04476 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAGCAACACTGAACTCCTCCTCCAACGTTACCCTTTTTCTTCTTCTTTTAGATTTCTTCCCTTAACAACAACCACCACTCTCTCATTCTCTCTCCTTCGCCCTCGATCCCTTCCTTTTCCCCTCAAATTCCATGCCTCCTTCTCCTTCAAGTCCCCGACCTCAACCCTCCGCGCCTTCTCCGACGCCGAGGAGGACGAAGAAGACGATGAAGAAGATGATGAAGAAGAAGACCAAGACCATGACCAAGACAACGTTTCTGCCGACGAATACGACGACGTTTTGGGTGAGGCTTCCGACGACGAGGCCGACGTGTTCTCTCCGCACGATGGATTCAAGTGGCAGAGAGTCGACAAGCTATGCAACGAAGTCAGGGAGTTCGGCGCCGATCTCATCGACGTCGACGAGCTCGCCTCCGTCTACGACTTCCGCATCGACAAGTTTCAGCGGCAGGCGATACTGGCTTTTCTGAGAGGCTTCTCGGTGGTGGTTTCCGCTCCGACGAGCAGCGGGAAGACGCTGATTGCGGAGGCCGCGGCGGTGGCCACGGTGGCTAGGGGACGGAGAATATTCTACACGACGCCGCTCAAGGCGCTGTCCAATCAGAAGTTTCGCGAGTTCCGCGAGACTTTTGGCGGCAGTAATGTTGGCCTTCTCACGGGTGATTCTGCAGTGAACAAGGATGCTCAGGTTTTGATTATGACCACGGAGATATTGCGCAACATGTTGTATCAGAGTGTTGGTAATGTTTCTTCTGGAAGTGGACTTGTAAATGTTGATGTGATTGTTTTGGATGAAGTTCATTACCTTAGTGACATATCTCGTGGTACAGTCTGGGAGGAGATTGTTATTTATTGCCCTAAAGAAGTTCAACTTATTTGCCTGTCAGCAACTGTTGCAAATCCTGATGAGTTGGCTGGGTGGATTGGTCAGATTCATGGTGAAACAGAATTGGTAACATCATCAAAACGCCCAGTTCCATTGACTTGGCATTTCTCTCTGAAGAATTCCTTATTACCACTTCTTAACGAGAAAGGAACACACATGAACAGGAAACTGTCACTCAATTATTTACAACTTCAAGCTGCAGTGGCTAAACCTTACAAGGATGATTGGTCTAGAAAAAGGAATCCCCGGAAACGAGGAACTCTCTCAGGCTATGATAGTGATGATAACATGTTTGAACAACGTTCCCTTTCAAAGAATAACATAAATGCAATTCGTCGTTCACAAGTTCCTCAAGTAATTGATACATTATGGCAACTTCAGTCCAGGGATATGCTGCCAGCTATTTGGTTTATTTTTAGCAGGAAGGGTTGTGATGCGGCTGTGCAATATCTTGAAAATTGCAAACTTTTAGATGAGTGTGAATCAAGTGAGGTTGAACTAGCCTTGAAAAGGTTCCGCAAGCAGTACCCTGATGCTGTCAGAGAATCAGCTGTGAGAGGACTTTTGGAAGGTGTTGCTGCTCATCATGCTGGATGTCTACCTTTGTGGAAGGCATTCATAGAAGAGTTGTTTCAAAGAGGACTTGTCAAGGTTGTTTTTGCTACAGAAACCCTGGCTGCTGGAATCAATATGCCTGCTAGAACAGCTGTTATTTCATCCCTCAGCAAAAGAGGTGATAGTGGACGTATCCCATTAAGCTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATTGATGAAAATGGTCATGTAGTTCTCATCCAAACTCCTAATGAAGGTGCTGAAGAGGGCTGCAAAGTACTGTTCGCTGGACTAGAGCCTCTAGTGTCACAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGCTGGTGTGAAAGCCATTCATAGGTCAAATGAATCAGATAACATGAAACCTTCCACAGGTAAAACTTTGGAAGAAGCTAGGAAATTAGTTGAGCAGAGTTTTGGAAATTATGTTAGTAGCAACGTAATGCTGGCTGCTAAAGAAGAAATTAATAAAATTGAAAAAGAAATTGAGTTTCTGATGTCAGAAATTACTGATGAAGCCATAGATAGGAAAAGCAGGAAGGCTTTATCACCACGACAATACAAGGAAATTGCAGAATTACTGGAAGATTTAAGGGCAGAAAAGCGTGTTCGGTCTGAATTGCGGAAACAGAAGGAAGCAAAGAGAATATCTGCCCTGAAACCTTTGTTGGAGGAGCCCGAAAGTGGACATTTACCATTTTTGTGCTTGCAGTATAGAGATTCTGAAGGAGTTGAACATTCAATTCCTGCTGTGTTTTTGGGGAAGGTTGACTCCCTTAATGCTTCAAAACTCAAAGATATGATTTCTTCTGTTGATTCTTTTGCATTGAATTTAGCAGACGCAGAGCCAAGTGTCGCTGATTCTGAATTGAAGGATGATCTTAAACCATCATATCATGTGGCTCTTGGTTCAGATAACACATGGTATCTATTTACAGAAAAGTGGATTAAAACGGTATATGGGACAGGCTTTCCTAATGTTCCATTGGCTGAAGGGGATGCTCGACCTCGAGAAATTATGAGTATTCTCCTTGATAAGGAGGACATGAAGTGGGATAAGCTTTCTCACTCCGAGCATGGTGGTTTATGGTTCATGGAAGGATCTCTAGATACATGGTCTTGGAGCTTGAATGTTCCTGTTTTGAGTAGCTTGTCAGAAAATGATGAGCTACTACTACAGTCTCAAGACTACAAAGATGCCATTGAACGTTACAAGGAACAAAGAAATAAAGTTTCACGGTTGAAGAAAAAGATAGTTCGTAGTGAAGGCTATAAAGAATATTTTAAAATCATAGATGCAGTCAAGTTTACTGAGGAGAAAATCAAGCGCCTGAAGAATAGATCTAAACGTTTGATTAATAGGATAGAACAAATTGAGCCCTCGGGTTGGAAGGAGTTTATGCAGGTTAGCAATGTCATTCACGAAATCAGAGCTTTAGATATTAATACACATATCATATTTCCACTTGGTGAAACCGCTGCTGCAATTCGAGGAGAAAATGAGCTATGGCTTGCGATGGTTCTTCGCAATAAAATTTTACTAGAACTAAAACCTGCACAGCTTGCTGCAGTGTGCGCAAGTTTGGTGTCCGCAGGTATCAAAGTCCGACCTGGGAAAAATAACAGTTACATTTATGAGCCTTCTGCAACTGTAACCAAATTCATAACGTTATTGGATGAGCAAAGAAGTGCCTTATTGGCAATGCAGGATAAACATGAGGTGACAATCTCCTGCTGTTTGGATAGCCAGTTTTGTGGTATGGTTGAGGCCTGGGCTTCTGGGTTGACATGGAGAGAATTAATGATGGATTGTGCAATGGATGATGGTGATTTAGCTCGTCTCCTTCGACGGACCATTGATCTGTTAGTTCAGATTCCAAAATTGCCAGATATTGATCCATTGTTGAAGCACAATGCCAAGGCTGCTTCTAGTGTCATGGATCGGCCACCAATAAGTGAACTTGTGGGGTAA
>Glyma01g04476.1 sequence type=predicted peptide gene model=Glyma01g04476 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNTELLLQRYPFSSSFRFLPLTTTTTLSFSLLRPRSLPFPLKFHASFSFKSPTSTLRAFSDAEEDEEDDEEDDEEEDQDHDQDNVSADEYDDVLGEASDDEADVFSPHDGFKWQRVDKLCNEVREFGADLIDVDELASVYDFRIDKFQRQAILAFLRGFSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGGSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSGSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGETELVTSSKRPVPLTWHFSLKNSLLPLLNEKGTHMNRKLSLNYLQLQAAVAKPYKDDWSRKRNPRKRGTLSGYDSDDNMFEQRSLSKNNINAIRRSQVPQVIDTLWQLQSRDMLPAIWFIFSRKGCDAAVQYLENCKLLDECESSEVELALKRFRKQYPDAVRESAVRGLLEGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSGRIPLSSNELLQMAGRAGRRGIDENGHVVLIQTPNEGAEEGCKVLFAGLEPLVSQFTASYGMVLNLLAGVKAIHRSNESDNMKPSTGKTLEEARKLVEQSFGNYVSSNVMLAAKEEINKIEKEIEFLMSEITDEAIDRKSRKALSPRQYKEIAELLEDLRAEKRVRSELRKQKEAKRISALKPLLEEPESGHLPFLCLQYRDSEGVEHSIPAVFLGKVDSLNASKLKDMISSVDSFALNLADAEPSVADSELKDDLKPSYHVALGSDNTWYLFTEKWIKTVYGTGFPNVPLAEGDARPREIMSILLDKEDMKWDKLSHSEHGGLWFMEGSLDTWSWSLNVPVLSSLSENDELLLQSQDYKDAIERYKEQRNKVSRLKKKIVRSEGYKEYFKIIDAVKFTEEKIKRLKNRSKRLINRIEQIEPSGWKEFMQVSNVIHEIRALDINTHIIFPLGETAAAIRGENELWLAMVLRNKILLELKPAQLAAVCASLVSAGIKVRPGKNNSYIYEPSATVTKFITLLDEQRSALLAMQDKHEVTISCCLDSQFCGMVEAWASGLTWRELMMDCAMDDGDLARLLRRTIDLLVQIPKLPDIDPLLKHNAKAASSVMDRPPISELVG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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