Glyma01g04410 - SoyBase

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Report for Sequence Feature Glyma01g04410

Feature Type:	gene_model
Chromosome:	Gm01
Start:	3950637
stop:	3955032
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70150	AT	Annotation by Michelle Graham. TAIR10: zinc ion binding \| chr1:26416898-26419521 FORWARD LENGTH=374	SoyBase	E_val: 4.00E-176	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR12197	Panther	SET AND MYND DOMAIN CONTAINING	JGI		ISS
PTHR12197:SF93	Panther	ZINC FINGER (MYND TYPE) FAMILY PROTEIN	JGI		ISS
PF01753	PFAM	MYND finger	JGI		ISS
UniRef100_F4I3Y1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc ion binding protein n=1 Tax=Arabidopsis thaliana RepID=F4I3Y1_ARATH	SoyBase	E_val: 2.00E-173	ISS
UniRef100_I1J5F5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5F5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04410

Paralog	Evidence	Comments
Glyma02g03150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g037400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g04410

Limit To All Plant Sequences

>Glyma01g04410.1   sequence type=CDS   gene model=Glyma01g04410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGCGCGGCGAAGGGGAGCGGAGGAAGGTGCGGCGGCAGCGGCAGCGGCGGTGCCACAAGACTCTGCGCTCGCTGCGAAGCCGTTGCATATTGCTCTCTCTCTCACCAGATTGCACACTGGAGTCGTCACAAACACGAGTGCGATAGGTTGCAACAGCAATTGAAGAGTGTCGAAGTCCTCAATAATTTTCCCTTCACTTTCTCTCGCGAATCCACGTTTCAGGTTTGTGTGAAGCAGGAAACTAGGTGTTCATTTTTTAGCAAGAGAGGCCTTCATCAAGTGGGAATGTGGATGCATGAATGCCATTGTGGAGCATCATCTACTTCATTTGATTGTTTAGGGTTAAACAATGGTTGGGATCTCCCAAGTAGTTTATGTCCCTGTTGTGAGCCTAGCTCTCCGGTATCAGAGCAGTTGCATTGTTGGAGAGACTACTATAAGTGGAGATGCATCCCGCTAGACTCGCCTGTTGCTTTGCTTCTTCAATGGCCACTTACAATATATCATGCTGCTCGACTTGTTGGAATTACAGCCTTGAATCCTGAAATCAGTGATAAGTTGTACATTCATTACCTTGGACCTGAGAAAGAGTTGCTACAACTTGCTGTGTTTGGAGAATTACTGGCACTCTTCCCCGGTGTACGAATTCATATAGAACTTGTTGGACCTGCAATTCCTCCTCAAAGGGATGGTGAGATGATTCACATTTCTAAGTATCCTTGTTGCAATGAAGACGAATGTGAATGCAAAATAGGAAGTAAAAATACATTCTTAGAAACACAATCTGGTATCACTTCCACTTTGACATTGCAACTTTGGCAAGGATTCTATCATGATCGATATAGAGATATTGTTAAGGATTCCTTTCCTCACCTAATAATTGCTCCAAATGGTGGCATTGCTGCTTATTCCAGTTGGTTACCAAGTATTGAGTTAATTAAAAAGATTGATGTCCCAGTTGTTTTTACTGATTATTGTGAAGAAGCTTGTCATCTTGCAGCCAATTGCATTAAGACTGTAACTGGAAGTCCTCTTAAATTGCCTGTTCAGTTAAATCCTTTCAGACAGCCCATGGCTGTGGAAGACAGCGTGCTGTTGCTTCCCTGCTACTCGAATTGTTATCTTTTTGGGATGTAA

Predicted protein sequences of Glyma01g04410

Limit To All Plant Sequences

>Glyma01g04410.1   sequence type=predicted peptide   gene model=Glyma01g04410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECAAKGSGGRCGGSGSGGATRLCARCEAVAYCSLSHQIAHWSRHKHECDRLQQQLKSVEVLNNFPFTFSRESTFQVCVKQETRCSFFSKRGLHQVGMWMHECHCGASSTSFDCLGLNNGWDLPSSLCPCCEPSSPVSEQLHCWRDYYKWRCIPLDSPVALLLQWPLTIYHAARLVGITALNPEISDKLYIHYLGPEKELLQLAVFGELLALFPGVRIHIELVGPAIPPQRDGEMIHISKYPCCNEDECECKIGSKNTFLETQSGITSTLTLQLWQGFYHDRYRDIVKDSFPHLIIAPNGGIAAYSSWLPSIELIKKIDVPVVFTDYCEEACHLAANCIKTVTGSPLKLPVQLNPFRQPMAVEDSVLLLPCYSNCYLFGM*

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