Glyma01g04380 - SoyBase

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Report for Sequence Feature Glyma01g04380

Feature Type:	gene_model
Chromosome:	Gm01
Start:	3925167
stop:	3926952
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24140	AT	Annotation by Michelle Graham. TAIR10: Matrixin family protein \| chr1:8536131-8537285 REVERSE LENGTH=384	SoyBase	E_val: 2.00E-128	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0031012	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular matrix	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0004222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10201	Panther	MATRIX METALLOPROTEINASE	JGI		ISS
PTHR10201:SF15	Panther	MATRIX METALLOPROTEINASE-RELATED	JGI		ISS
PF00413	PFAM	Matrixin	JGI		ISS
PF01471	PFAM	Putative peptidoglycan binding domain	JGI		ISS
UniRef100_G7K5L1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Matrix metalloproteinase-9 n=1 Tax=Medicago truncatula RepID=G7K5L1_MEDTR	SoyBase	E_val: 6.00E-178	ISS
UniRef100_I1J5F2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5F2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04380

Paralog	Evidence	Comments
Glyma02g03190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g037200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g04380

Limit To All Plant Sequences

>Glyma01g04380.1   sequence type=CDS   gene model=Glyma01g04380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACTTCTCATCAACAACGTTATCTCCTCTTCGCTTTCACTACGTTAATAGTTTTCTTCAGCTTCAACACTACACCAGTTTCGGCTCGTTTGTTCCCCAACGTTTCCTCCATCCCAAGGTGGAACACATCCCACGCGCCACCTGATAGCGCGTGGAACGCGTATCGCAATTTCACTGGGTGCCGCCCGGGAAAAACATATAACGGTCTTTCGAATCTGAAAAACTACTTTCATTATTTTGGCTACATCTCCAACGTGTCCTCGAAGTCGTCGAATTTTAGCGACGATTTCGATGATGCGTTGGAGGCAGCCGTTAGAGCCTACCAGAAGAACTTCAACCTCAACATCACAGGGGAGCTCGACGACCCCACGATGAACCAAATCGTCAAGCCACGCTGCGGCGTGGCTGACATCATCAACGGAACCACAACAATGAACTCCGGCAAGACAAACACCACGGATTCACCGACGTTCCACACGGTAGCGCATTATTCTTTCTTTGACGGCCAGCCGCGGTGGCCGGTGGGGACACAAGAACTAACCTACGCCTTCGATCCCGATAACGCTCTCGACGACGTGATTAAGACCGTGTTTGGCAACGCGTTTAGCAGATGGTCAGAGGTGACCACGATTTCTTTCCGCGAAACGGCGTCGTATGTGGCTGCGGACATAAGAATAGGGTTTTACGGTGGGGACCACGGCGACGGCGAACCTTTTGATGGCGTGTTGGGGACGTTGGCGCACGCGTTCTCGCCGACGAACGGGATGTTCCACCTGGACTCGGCGGAGGACTGGGTGGCCTCCGGCGACGTGACGAAGGCGTCGCTGTCGAACGCGGTGGATCTTGAATCCGTGGCGGTGCATGAGATTGGGCACTTGCTAGGGTTAGGGCACTCTTCGGTTGAAGATGCTATTATGTACCCTACGATTACCGCGAGGACGAGGAAGGTGGAGCTCAACGAAGATGATATACAAGGGATTCAGGTTCTCTACGGTTCCAACCCTAATTTCACTGGGACTCCTGCTACCTCTTCGCGTGAGAGCGACACGAGCGATGGTGGTGTTCGGCACGTGGGAGCCACGTGCGGTGTGTTCTTCTCTCTTTTGTTCTTCGTTGTGTTTGGATTGCACGTGTGA

Predicted protein sequences of Glyma01g04380

Limit To All Plant Sequences

>Glyma01g04380.1   sequence type=predicted peptide   gene model=Glyma01g04380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSHQQRYLLFAFTTLIVFFSFNTTPVSARLFPNVSSIPRWNTSHAPPDSAWNAYRNFTGCRPGKTYNGLSNLKNYFHYFGYISNVSSKSSNFSDDFDDALEAAVRAYQKNFNLNITGELDDPTMNQIVKPRCGVADIINGTTTMNSGKTNTTDSPTFHTVAHYSFFDGQPRWPVGTQELTYAFDPDNALDDVIKTVFGNAFSRWSEVTTISFRETASYVAADIRIGFYGGDHGDGEPFDGVLGTLAHAFSPTNGMFHLDSAEDWVASGDVTKASLSNAVDLESVAVHEIGHLLGLGHSSVEDAIMYPTITARTRKVELNEDDIQGIQVLYGSNPNFTGTPATSSRESDTSDGGVRHVGATCGVFFSLLFFVVFGLHV*

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