Glyma01g04340 - SoyBase

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Report for Sequence Feature Glyma01g04340

Feature Type:	gene_model
Chromosome:	Gm01
Start:	3894969
stop:	3896837
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24130	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr1:8534183-8535430 REVERSE LENGTH=415	SoyBase	E_val: 3.00E-136	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0645	KOG	WD40 repeat protein	JGI		ISS
PTHR22844	Panther	F-BOX AND WD40 DOMAIN PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF11715	PFAM	Nucleoporin Nup120/160	JGI		ISS
UniRef100_G7K5I2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein-like protein n=1 Tax=Medicago truncatula RepID=G7K5I2_MEDTR	SoyBase	E_val: 5.00E-177	ISS
UniRef100_I1J5E9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5E9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04340

Paralog	Evidence	Comments
Glyma02g03350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g036800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g04340

Limit To All Plant Sequences

>Glyma01g04340.1   sequence type=CDS   gene model=Glyma01g04340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACTTCTTCAACGTCCCTTGTGTTGCCACACACAACAACCACAATCCCATCATCACCTTCATTCCGAGTCATCAACTTCATCCTCCCTCTCTTCACAACCAAGCCTCCCTTCTGTCCCCTCCCTCACCCCACAAAAACCGCATTTCCTCGAAGAACAACCCCAAACCACCCACCACAGACTCATCACCGCCGTCAAGGGCCACACCTCACCAATCTTCTCCCTCGCCCTCCACGGCAAGTCCCTCTATAGCGCCTCCTCCGGCGGCGAAATAAGAGCATGCAATAGAAATCCCACATCGGCTAATGATATAATCACATTAAAATATATAAGTAATGTCAACACCAACACTGTTGTCGCGACCAGCAACGCGCCAATCAAGTCCCTCATCGTATCCCACGACAAGTTATTCACTGCTCACCAAGACCACAAAATCCGTGTCTGGAAAACAACAACCGACCAACCCGGTAACAACAACAACAACAACCCGAACTACTACAAATGCGTCGCCACGCTTCCCACCCTCCACGACCGTATCTCCAAACTCTTCTCCTCCAAGAACTACGTCGAGATTCGCCGCCACAAGAAGCGCACGTGGGTGCATCACGTGGACACCGTCTCCGCCCTCGCGCTTTCCCGAGACGGGTCCCTCCTCTACTCCGCTTCATGGGACCGAACATTCAAGATCTGGCGAACCTCGGATTTCAAGTGTCTGGAGTCAGTTAAAAACGCGCACGAGGACGCAATTAATTCCTTAGTTTTGTCGAATAACGGTTTTGTCTACACAGGTTCCGCGGACACTAGAATAAAGATGTGGAAGAAGTTAGAGGGAGAGAAAAAGCATTCTCTAATAGGAACCTTGGAGAAGCATAAATCCGCTGTTAACGCTCTTGCTCTTAACTCCGATGGATCAGTGTTATATTCAGGTGCGTGTGATAGGTCAATTTTAGTGTGGGAGAGTGATCAAAATGAAAATAATAACACCATGGTGTTGGTGGGTGCTTTGAGGGGGCACACAAAAGCGATACTGTGTTTGGTGGTGGTGGCGGATTTGGTGTGTAGTGGATCTGCTGATAACAGTGTTAGGGTATGGAGGAGAGGTGCTGAGAAGAGTTATTCGTGTTTGGCGGTGTTTGAAGGTCATCGACGACCCGTGAAGTGTTTGGCTATGGCTGTTGACTCCAACAGTGGTGGTCCTCGTGAGGATGATCATAATAGTAGCTCTTATCTGGTTTACAGTGCAGGTTTAGATTGTGAGATTAAAGTGTGGCAAATACGCGTTCCTTCGCTGTCGTTGTGA

Predicted protein sequences of Glyma01g04340

Limit To All Plant Sequences

>Glyma01g04340.1   sequence type=predicted peptide   gene model=Glyma01g04340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLLQRPLCCHTQQPQSHHHLHSESSTSSSLSSQPSLPSVPSLTPQKPHFLEEQPQTTHHRLITAVKGHTSPIFSLALHGKSLYSASSGGEIRACNRNPTSANDIITLKYISNVNTNTVVATSNAPIKSLIVSHDKLFTAHQDHKIRVWKTTTDQPGNNNNNNPNYYKCVATLPTLHDRISKLFSSKNYVEIRRHKKRTWVHHVDTVSALALSRDGSLLYSASWDRTFKIWRTSDFKCLESVKNAHEDAINSLVLSNNGFVYTGSADTRIKMWKKLEGEKKHSLIGTLEKHKSAVNALALNSDGSVLYSGACDRSILVWESDQNENNNTMVLVGALRGHTKAILCLVVVADLVCSGSADNSVRVWRRGAEKSYSCLAVFEGHRRPVKCLAMAVDSNSGGPREDDHNSSSYLVYSAGLDCEIKVWQIRVPSLSL*

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