SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G70180 | AT | Annotation by Michelle Graham. TAIR10: Sterile alpha motif (SAM) domain-containing protein | chr1:26426768-26429097 FORWARD LENGTH=460 | SoyBase | E_val: 4.00E-23 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PTHR10627 | Panther | SCP160 | JGI | ISS | |
| PTHR10627:SF11 | Panther | STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEI | JGI | ISS | |
| PF00536 | PFAM | SAM domain (Sterile alpha motif) | JGI | ISS | |
| UniRef100_G7K485 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SAM domain family protein n=1 Tax=Medicago truncatula RepID=G7K485_MEDTR | SoyBase | E_val: 1.00E-163 | ISS |
| UniRef100_I1J5E8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5E8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g04320 not represented in the dataset |
Glyma01g04320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g03370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g036700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g04320.2 sequence type=transcript gene model=Glyma01g04320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTCCATGGGGTCTATCTTACACTTTTTTTGTGGTCTTTCTCACACAAAAACTCTATCAGAAAAATAAAAAAACCACACACGAGGGAACAGACAGAACCATTTATTAATGACCCAGCCCTATAGGAACCGCGGTCTGTTGATGAGACGGTCCTGATTCAATCACGCAGCCACGATATTCCCTGCGCACAGCACCACTACTCCCTCGGTGCTCCTCCGTTTCCACTTCAACGCCAAATCATCGCCTCTCTCTCTCTCTCTTCCACCAATAACCCCTTCCCTCTTCTCTCTCTCTCTCTAATTCGAAGCTGAATCCGAATTCAAACCGTGGTGGTGACGTGTTTTTCTCTGCCTCTGCTTCTAGTCGCGGCAATGGGATTAGGGTTACGGTTACGGTGAGTCTTCGCGATTGTAGCGGTAACAGGTCGTGTCGCGGTTGAGAAGTTTTCGCTCAATTGATAGGTTAGGGTTTCGGTTATCGTCATGTCCGATCCTTCGAGGGGTCGCGTTACCATTACTCTAGGGCGTAGCGGTCATGTTGTGAAGAGGGATGCATCTGCTGTAGATGTTTCTTCTTTCTCTTCTATTCATTCAGCTGGCACTAAGCGGTCTGTAAGAGACAGAATTGGAAGTAATGCAGATAGTTCTGGGTGGCATGGAAATGGACATAGCGGCAATAAACGACACCGAGGAGATGTAAGCATGCAAAATGGACTGGATGGCAATGATCTACGATTGAAGCTCATGCGAAAAAGTGCATTGGGGCAGGCTGACAGCAATGGCAGTAAGAGGCATATGGACCTCCGTGAAAAGCTGTCAAAGGCAAGTCACCCTCTGGCTAACACTTATAATTCGAAGCAGCATGGGCCAGATTCAAGGGAAACAAGTTTGAGGCAAATTCCCTCAGCTAGAAGTTCTGATAAATTACTGCGTATGGAATCCATGAGAAGCTCATACTCTCCTTGGACATTGGATCATATTAGGAGAAGATCACCAGATGGGTTTCCAAGTACTTCCAGGGGGATTTCCCCCCAAAGGGATGTCCAAGACCTACATAGAAGGCCTGTAAGCAGGACATATGATGGTGTCAGATCAGTTTCATATGTAGGTAGGGATGTTCTTGAAACTTCGAGGCCTCCAATAAGTACACCCCAATCTTTCATGTCACGCTCCACAATGTCCACATTGCCTCCAGTAACTGTCAAGCCTGTAGCATCTCATCCTGGTCAACTTCCTCCATCGGGCAGTGTTGCTCAAAGGCCTTCATATGTGTTGCAGAACAGATGCTGAACAGAGGCTGTCCAGCAACAGCGCAGGTTGCCAAGGCTGTCCAGCGATGGTACAGGTCGTAGAGCCTATCCGGCAACAACGCAGAGGAGTGGCCGCAAATGGCAATGATGGCCACGAAATCAGCCATGATAAGTGGTGCTACAGCTGCAACTCAACCGGCTCCGTGATGGCAAGCAGAACTGCGGGGAGGGGTGCTGTGATATCGTAATGACTGT
>Glyma01g04320.1 sequence type=CDS gene model=Glyma01g04320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGATCCTTCGAGGGGTCGCGTTACCATTACTCTAGGGCGTAGCGGTCATGTTGTGAAGAGGGATGCATCTGCTGTAGATGTTTCTTCTTTCTCTTCTATTCATTCAGCTGGCACTAAGCGGTCTGTAAGAGACAGAATTGGAAGTAATGCAGATAGTTCTGGGTGGCATGGAAATGGACATAGCGGCAATAAACGACACCGAGGAGATGTAAGCATGCAAAATGGACTGGATGGCAATGATCTACGATTGAAGCTCATGCGAAAAAGTGCATTGGGGCAGGCTGACAGCAATGGCAGTAAGAGGCATATGGACCTCCGTGAAAAGCTGTCAAAGGCAAGTCACCCTCTGGCTAACACTTATAATTCGAAGCAGCATGGGCCAGATTCAAGGGAAACAAGTTTGAGGCAAATTCCCTCAGCTAGAAGTTCTGATAAATTACTGCGTATGGAATCCATGAGAAGCTCATACTCTCCTTGGACATTGGATCATATTAGGAGAAGATCACCAGATGGGTTTCCAAGTACTTCCAGGGGGATTTCCCCCCAAAGGGATGTCCAAGACCTACATAGAAGGCCTGTAAGCAGGACATATGATGGTGTCAGATCAGTTTCATATGTAGGTAGGGATGTTCTTGAAACTTCGAGGCCTCCAATAAGTACACCCCAATCTTTCATGTCACGCTCCACAATGTCCACATTGCCTCCAGTAACTGTCAAGCCTGTAGCATCTCATCCTGGTCAACTTCCTCCATCGGGCAGTGTTGCTCAAAGGCCTTCATATGTGGGTGATGAACAAGTACAAGTACAACAATCTCACCAAACTGTGGATGGCCTATTACATGCATTGGGACTTCAAAAATATGCCATTCTCTTTAAGGCTGAGGAAGTGGATATGACTGCATTGAAGCAGATGGGAGAAAATGACCTCAAAGAGCTTGGGATTCCTATGGGTCCCAGGAAAAAAATTCTTCTTGCTGTCTTGCCCCGTACTAAGCGTCAACAATGA >Glyma01g04320.2 sequence type=CDS gene model=Glyma01g04320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGATCCTTCGAGGGGTCGCGTTACCATTACTCTAGGGCGTAGCGGTCATGTTGTGAAGAGGGATGCATCTGCTGTAGATGTTTCTTCTTTCTCTTCTATTCATTCAGCTGGCACTAAGCGGTCTGTAAGAGACAGAATTGGAAGTAATGCAGATAGTTCTGGGTGGCATGGAAATGGACATAGCGGCAATAAACGACACCGAGGAGATGTAAGCATGCAAAATGGACTGGATGGCAATGATCTACGATTGAAGCTCATGCGAAAAAGTGCATTGGGGCAGGCTGACAGCAATGGCAGTAAGAGGCATATGGACCTCCGTGAAAAGCTGTCAAAGGCAAGTCACCCTCTGGCTAACACTTATAATTCGAAGCAGCATGGGCCAGATTCAAGGGAAACAAGTTTGAGGCAAATTCCCTCAGCTAGAAGTTCTGATAAATTACTGCGTATGGAATCCATGAGAAGCTCATACTCTCCTTGGACATTGGATCATATTAGGAGAAGATCACCAGATGGGTTTCCAAGTACTTCCAGGGGGATTTCCCCCCAAAGGGATGTCCAAGACCTACATAGAAGGCCTGTAAGCAGGACATATGATGGTGTCAGATCAGTTTCATATGTAGGTAGGGATGTTCTTGAAACTTCGAGGCCTCCAATAAGTACACCCCAATCTTTCATGTCACGCTCCACAATGTCCACATTGCCTCCAGTAACTGTCAAGCCTGTAGCATCTCATCCTGGTCAACTTCCTCCATCGGGCAGTGTTGCTCAAAGGCCTTCATATGTGTTGCAGAACAGATGCTGA
>Glyma01g04320.1 sequence type=predicted peptide gene model=Glyma01g04320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDPSRGRVTITLGRSGHVVKRDASAVDVSSFSSIHSAGTKRSVRDRIGSNADSSGWHGNGHSGNKRHRGDVSMQNGLDGNDLRLKLMRKSALGQADSNGSKRHMDLREKLSKASHPLANTYNSKQHGPDSRETSLRQIPSARSSDKLLRMESMRSSYSPWTLDHIRRRSPDGFPSTSRGISPQRDVQDLHRRPVSRTYDGVRSVSYVGRDVLETSRPPISTPQSFMSRSTMSTLPPVTVKPVASHPGQLPPSGSVAQRPSYVGDEQVQVQQSHQTVDGLLHALGLQKYAILFKAEEVDMTALKQMGENDLKELGIPMGPRKKILLAVLPRTKRQQ* >Glyma01g04320.2 sequence type=predicted peptide gene model=Glyma01g04320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDPSRGRVTITLGRSGHVVKRDASAVDVSSFSSIHSAGTKRSVRDRIGSNADSSGWHGNGHSGNKRHRGDVSMQNGLDGNDLRLKLMRKSALGQADSNGSKRHMDLREKLSKASHPLANTYNSKQHGPDSRETSLRQIPSARSSDKLLRMESMRSSYSPWTLDHIRRRSPDGFPSTSRGISPQRDVQDLHRRPVSRTYDGVRSVSYVGRDVLETSRPPISTPQSFMSRSTMSTLPPVTVKPVASHPGQLPPSGSVAQRPSYVLQNRC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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