SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G24100 | AT | Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 74B1 | chr1:8525547-8527010 REVERSE LENGTH=460 | SoyBase | E_val: 9.00E-167 | ISS |
| GO:0006569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0052544 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition in cell wall | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008194 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0047251 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: thiohydroximate beta-D-glucosyltransferase activity | SoyBase | N/A | ISS |
| KOG1192 | KOG | UDP-glucuronosyl and UDP-glucosyl transferase | JGI | ISS | |
| PTHR11926 | Panther | GLUCOSYL/GLUCURONOSYL TRANSFERASES | JGI | ISS | |
| PTHR11926:SF15 | Panther | UDP-GLUCURONOSYLTRANSFERASE RELATED | JGI | ISS | |
| PF00201 | PFAM | UDP-glucoronosyl and UDP-glucosyl transferase | JGI | ISS | |
| UniRef100_G7K464 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: N-hydroxythioamide S-beta-glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7K464_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J5E3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5E3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g04250 not represented in the dataset |
Glyma01g04250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g03420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g036000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g04250.1 sequence type=CDS gene model=Glyma01g04250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCATCAGAGGCAAAACAACATCCATGTTCTTGTTCTTCCATACCCTGCCCAAGGCCACATCAACCCCCTTGTCCAATTCGCAAAAAGATTAGCTTCAAAGGGTGTCAAAGCCACAGTTGCCACCACCCACTACACTGCCAACTCCATCAATGCACCCAACATCACGGTCGAAGCCATCTCCGATGGTTTCGACCAAGCCGGCTTCGCCCAGACCAACAACAACGTGCAACTCTTCCTTGCCTCCTTCAGAACAAACGGCTCCAGGACCTTGTCTGAGCTCATCAGAAAACACCAACAAACTCCCTCCCCCGTCACCTGCATTGTCTATGACTCATTTTTCCCCTGGGTTCTCGACGTGGCGAAGCAGCATGGCATTTACGGAGCCGCCTTTTTCACCAACTCTGCTGCGGTCTGCAACATATTCTGTCGCCTACACCATGGTTTCATTCAGCTCCCTGTTAAGATGGAACACCTTCCCCTTCGTGTTCCGGGGCTTCCTCCCTTGGATTCCCGCGCTCTCCCCAGTTTCGTCAGGTTCCCCGAAAGCTACCCTGCTTACATGGCCATGAAATTGAGCCAATTCTCCAACTTGAACAATGCGGATTGGATGTTCGTCAACACCTTTGAAGCATTGGAAAGCGAGGTGTTGAAAGGCTTAACGGAGCTCTTTCCGGCAAAGATGATAGGACCAATGGTCCCTTCTGGTTACTTGGATGGGAGGATTAAAGGGGACAAAGGGTATGGAGCAAGTCTATGGAAGCCGCTAACTGAAGAGTGCAGCAATTGGTTGGAATCAAAGCCTCCTCAGTCTGTAGTGTACATCTCCTTTGGAAGCATGGTGTCATTGACAGAAGAACAGATGGAAGAGGTGGCTTGGGGATTGAAAGAAAGTGGGGTGAGTTTCTTGTGGGTTTTAAGAGAATCTGAGCATGGAAAATTGCCCTGTGGGTACAGAGAGTCGGTAAAAGATAAGGGTCTAATTGTGACATGGTGTAACCAACTTGAATTGCTGGCTCACCAAGCCACTGGCTGCTTTGTGACTCATTGTGGCTGGAATTCCACCCTCGAAAGTCTTAGCCTCGGCGTTCCGGTGGTGTGTTTGCCACAGTGGGCTGACCAGTTGCCTGATGCTAAATTTTTGGATGAAATCTGGGAGGTTGGTGTGTGGCCTAAGGAGGATGAGAAAGGAATTGTGAGGAAGCAAGAATTTGTCCAGAGTTTGAAGGATGTGATGGAGGGTCAAAGAAGCCAAGAGATTAGAAGGAATGCCAATAAATGGAAGAAGTTGGCTAGGGAAGCAGTTGGTGAAGGAGGCAGCTCTGATAAGCACATTAATCAATTTGTGGATCATTTGATGAATGCAGATAAAAATGGAAGTTTGAATGTATACTGA
>Glyma01g04250.1 sequence type=predicted peptide gene model=Glyma01g04250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVHQRQNNIHVLVLPYPAQGHINPLVQFAKRLASKGVKATVATTHYTANSINAPNITVEAISDGFDQAGFAQTNNNVQLFLASFRTNGSRTLSELIRKHQQTPSPVTCIVYDSFFPWVLDVAKQHGIYGAAFFTNSAAVCNIFCRLHHGFIQLPVKMEHLPLRVPGLPPLDSRALPSFVRFPESYPAYMAMKLSQFSNLNNADWMFVNTFEALESEVLKGLTELFPAKMIGPMVPSGYLDGRIKGDKGYGASLWKPLTEECSNWLESKPPQSVVYISFGSMVSLTEEQMEEVAWGLKESGVSFLWVLRESEHGKLPCGYRESVKDKGLIVTWCNQLELLAHQATGCFVTHCGWNSTLESLSLGVPVVCLPQWADQLPDAKFLDEIWEVGVWPKEDEKGIVRKQEFVQSLKDVMEGQRSQEIRRNANKWKKLAREAVGEGGSSDKHINQFVDHLMNADKNGSLNVY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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