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Report for Sequence Feature Glyma01g04122

Feature Type:gene_model
Chromosome:Gm01
Start:3576872
stop:3579242
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g04122
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70230AT Annotation by Michelle Graham. TAIR10: TRICHOME BIREFRINGENCE-LIKE 27 | chr1:26450389-26451724 FORWARD LENGTH=416 SoyBaseE_val: 1.00E-156ISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0010411GO-bp Annotation by Michelle Graham. GO Biological Process: xyloglucan metabolic process SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PTHR13533Panther FAMILY NOT NAMED JGI ISS
PTHR13533:SF3Panther gb def: unknown protein [takifugu rubripes] JGI ISS
PF03005PFAM Arabidopsis proteins of unknown function JGI ISS
UniRef100_I1JC01UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JC01_SOYBN SoyBaseE_val: 0ISS
UniRef100_O04523UniRef Annotation by Michelle Graham. Most informative UniRef hit: F20P5.5 protein n=1 Tax=Arabidopsis thaliana RepID=O04523_ARATH SoyBaseE_val: 5.00E-154ISS

Expression Patterns of Glyma01g04122
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g04122 not represented in the dataset
Glyma01g04122 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g04122 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g034600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g04122
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g04122
>Glyma01g04122.1   sequence type=CDS   gene model=Glyma01g04122   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAATTACTGACCAATTCAAAGACAACAAATCCCTCGCCCTCACCAAGAGACTTATTCCATGGACCATTTGTGTTCTGCTTCCTATGGCTCTGATTCATTCATTCTTTTACCCTTTACCCTTTTCTCCATCTCCTAAAACTGATCTTCCACATTCCACCAATAATAACATCACGTACCGTTCTTCTCTTTCAGCTTCTCCTCCTTCTTCTGCAGAAAAGGGAAAAACTAAAGAGACCAAATGTGACTATTGCAATGGTGAATGGGTGAGTGACAGTGGAAGCCCTTTGTACAATGATACAACATGTGGAACAATCAAAGAGGGCAGAAATTGCATCACACATGGCAGGCCTGAATCTGGCTATCTTCACTGGAGATGGAAACCAACTCAATGCAATCTTCCAAGGTTTGAGCCACAAACTTTTCTCCAACACATTAAGAACAAGCATGTAGCTTTTGTGGGGGACTCTATGGCCAGGAACCAATTAGAGTCCCTTCTTTGCATGTTAGCCACTGCCTCAACTCCTAACCTTGTCTACAACCACAAAACTGGCAAGGACAACCAATTCAGCCGGTGGCACTTTCCTTCACACAATGCAAGCGTTTCCTTGTATTGGTCTCCTTTTCTTGTGCATGGTGTTGAAAAATCAAGCACAAACCCAAATAATAATCTGTACTTGGATCATGTTGATGAGAGGTGGGCAAACGATATGGATCAAATGGACTTGATTGTGTTATCATTTGGACATTGGCTTTTGCTTCCAGCAGTTTACCATGAGGGTGATTCAGTTTTAGGTTGCCACTACTGTCCTGGGCTTAATCACACTGAAATTGGGTTTTATATTGTGTTAAGAAAGGCCCTTAGAACCACCCTTAATAGCATAATTGAGAGAAGAGGAGATAAAGGCAATGGAATTGATGTAATTGTGACAACATTTTCACCACATCATTTTGAAGGTGAGTGGGATAAGGCTGGTGCATGTCCAAAGACTAAGCCCTATAGAAATGCGGAGAAGCAACTTGAAGGGATGGATGCTGAGATGAGAAAGATTGAGATTGAAGAAGTGGAATATGCCAAGGCAAAAGCCAAAAGAAGGTTAAGATTAGAAGCATTAGATGTGACCAAATTGGCATTATTGAGACCTGATGGCCACCCTGGTCCTTATATGAATCCTTTTCCATTTGTAAATGGGAATGCAGGGAGTGTGCAGAATGATTGTGTTCATTGGTGCTTGCCTGGACCTATAGACACATGGAATGAGATTCTTTTGGAAATGATGAAGAAGTGGGAAAAGCAATCAAGGAATGAAGACTGA
Predicted protein sequences of Glyma01g04122
>Glyma01g04122.1   sequence type=predicted peptide   gene model=Glyma01g04122   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPITDQFKDNKSLALTKRLIPWTICVLLPMALIHSFFYPLPFSPSPKTDLPHSTNNNITYRSSLSASPPSSAEKGKTKETKCDYCNGEWVSDSGSPLYNDTTCGTIKEGRNCITHGRPESGYLHWRWKPTQCNLPRFEPQTFLQHIKNKHVAFVGDSMARNQLESLLCMLATASTPNLVYNHKTGKDNQFSRWHFPSHNASVSLYWSPFLVHGVEKSSTNPNNNLYLDHVDERWANDMDQMDLIVLSFGHWLLLPAVYHEGDSVLGCHYCPGLNHTEIGFYIVLRKALRTTLNSIIERRGDKGNGIDVIVTTFSPHHFEGEWDKAGACPKTKPYRNAEKQLEGMDAEMRKIEIEEVEYAKAKAKRRLRLEALDVTKLALLRPDGHPGPYMNPFPFVNGNAGSVQNDCVHWCLPGPIDTWNEILLEMMKKWEKQSRNED*






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