SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G26830 | AT | Annotation by Michelle Graham. TAIR10: Threonyl-tRNA synthetase | chr5:9437351-9441568 FORWARD LENGTH=709 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation | SoyBase | N/A | ISS |
| GO:0006435 | GO-bp | Annotation by Michelle Graham. GO Biological Process: threonyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0043039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0004829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: threonine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG1637 | KOG | Threonyl-tRNA synthetase | JGI | ISS | |
| PTHR11451 | Panther | TRNA SYNTHETASE-RELATED | JGI | ISS | |
| PTHR11451:SF5 | Panther | THREONYL-TRNA SYNTHETASE | JGI | ISS | |
| PF00587 | PFAM | tRNA synthetase class II core domain (G, H, P, S and T) | JGI | ISS | |
| PF02824 | PFAM | TGS domain | JGI | ISS | |
| PF03129 | PFAM | Anticodon binding domain | JGI | ISS | |
| PF07973 | PFAM | Threonyl and Alanyl tRNA synthetase second additional domain | JGI | ISS | |
| UniRef100_G7K2Q8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Threonyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7K2Q8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J5B4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5B4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g03930 not represented in the dataset |
Glyma01g03930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g03750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g032500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g03930.1 sequence type=CDS gene model=Glyma01g03930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTATGCTCTCTAATCCGTATCCGCCGTCACGCTCCTTTCCACCACACTCTCCGCTCTCTCTTGCCGATTAACCGTTTCTCCTCCTCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCGCCATGGTTGCTCACGCGAAGGACGAGGCGTACCTTAGCGCGGCGATTCCGAAGCGCGTCCGTCTCTTCGAGACCATCCAGGCGGAGCAGCGCACGCAGCGCCTCTCGCTTTCGCCGGATCCTATCAAGGTCACTCTCCCCGACGGCAACGTCAAGGACGCGAAGAAGTGGCTCTCGACGCCGCTCGACGTGGCGCGCGAAATCTCGAAGAATTTGGCCAACAGCGCGCTCATCGCGAAGGTCAATGGCGTGCTCTGGGACATGACGCGCCCTCTCGAGGACGACTGCCAGCTCCAGATCTTCAAGTTCGACGACGACGAAGGCCGCGACACCTTCTGGCACTCCAGCGCTCACATTCTCGGCCAGTCACTTGAGACGGAGTATGGATGCAAGTTATGCATTGGGCCTTGCACTACAAGAGGAGAGGGGTTCTATTATGATGCGTTTTACGGGGACTTGGGTCTCAATGACGATCACTTTAAGCAGATTGAGGCTGGAGCATTGAAGGCTGTTGCGGAAAAGCAACCCTTTGAGCGCATTGAAGTTACACGCGATCAGGCACTTGAGATGTTTTCAGATAATAAGTTTAAGATCGAGATTATCAATGATTTGCCTGCCGACAAAACTATCACAGTATACAGATGTGGTCCCTTGGTGGATTTGTGTCGTGGGCCCCATATACCTAATACATCCTTTGTCAAAGCAATTGCGTGTTTAAAGGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAAAGTCTGAAGGAATACTTGCATCGGCTGGAGGAGGCTAAAAAGTATGATCACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAGTCCGGGAAGCTGGTTTTTTCTTCCACATGGCGCTCGGATCTACAACAAACTCATGGACTTCATTCGGAATCAGTACAGGGACAGAGGCTATCAAGAGGTCATATCTCCAAATGTATTTAACATGGATCTATGGGTGCAATCTGGTCATGCTGCAAATTATAGGGAGGATATGTTTATCTTAGAGGTTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGAACTTCCTCTTCGCTTTGCTGATTTTGGGGTTTTGCATCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGATGATGCACATATTTTCTGCAGGGAGTCCCAGATAAAGGATGAAGTGAGGAATGGCTTGAATTTCATCAATTATGTCTATAAGATATTTGGTTTCACGTATGAGCTGAAGCTTTCAACGAGGCCAGAGAAATACCTAGGAGATATTGCAACTTGGGACAAAGCTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTAATGATACACAGAGCCATCCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCTTTCTGGCTCAGTCCTCGTCAAGCGATTGTATGCCCTGTGTCTGAAAAGTCACAATCTTATGCACTACAGGTGCGAGATCAGATCCACCAAGCAGGGTATCACGTTGATGCTGATACAACTGATAGGAAGATTCAGAAAAAGGTACGAGAAGCACAGTTAGCACAATACAACTTCATATTGGTTGTTGGAGAGGAGGAAGCTAATTCAGGACAGGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGAAACTACTTGAACATTTCAGAGACAAAACTGCAGCTTTCGAATGA
>Glyma01g03930.1 sequence type=predicted peptide gene model=Glyma01g03930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLCSLIRIRRHAPFHHTLRSLLPINRFSSSSSSSASAAAAAAMVAHAKDEAYLSAAIPKRVRLFETIQAEQRTQRLSLSPDPIKVTLPDGNVKDAKKWLSTPLDVAREISKNLANSALIAKVNGVLWDMTRPLEDDCQLQIFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAEKQPFERIEVTRDQALEMFSDNKFKIEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGARIYNKLMDFIRNQYRDRGYQEVISPNVFNMDLWVQSGHAANYREDMFILEVDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNGLNFINYVYKIFGFTYELKLSTRPEKYLGDIATWDKAESALKEALDDFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNFILVVGEEEANSGQVSVRVRDLAEHKVMSIEKLLEHFRDKTAAFE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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