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Report for Sequence Feature Glyma01g03820

Feature Type:gene_model
Chromosome:Gm01
Start:3263268
stop:3267637
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g03820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23800AT Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 2B7 | chr1:8412238-8414804 REVERSE LENGTH=534 SoyBaseE_val: 0ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004028GO-mf Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity SoyBaseN/AISS
GO:0004029GO-mf Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NAD) activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG2450 KOG Aldehyde dehydrogenase JGI ISS
PTHR11699Panther ALDEHYDE DEHYDROGENASE-RELATED JGI ISS
PTHR11699:SF46Panther SUCCINATE-SEMIALDEHYDE DEHYDROGENASE-RELATED JGI ISS
PF00171PFAM Aldehyde dehydrogenase family JGI ISS
UniRef100_C7A2A0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial benzaldehyde dehydrogenase n=1 Tax=Antirrhinum majus RepID=C7A2A0_ANTMA SoyBaseE_val: 0ISS
UniRef100_I1J5A5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5A5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g03820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g03820
ParalogEvidenceComments
Glyma02g03870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g03820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g031500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g03820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g03820
>Glyma01g03820.1   sequence type=CDS   gene model=Glyma01g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATCAATGAGGATCTCAAGGCTGCTCTCTCGTTCTTTTCTTTCTGCTTCCACTACTCCTTTGTTCTCTAGAGGTGGAAGTGGTGCTCTTGGTGCAGGGCTCAGTAAATTCAGCACTGCTGCTGCAATTGAAGAACCAATCAAACCACCAGTTAAAGTAGAACACACCCAGCTCTTAATCGATGGAAAATTCGTTGATGCTGCTACTGGCAAAACTTTTCCAACGTTGGACCCCAGGACAGGAGATGTGATTTCTCATGTTGCTGAGGGTGACCATGAAGATGTTGATCGAGCAGTTGCAGCTGCTCGCAAAGCCTTCGACCATGGACCTTGGCCAAAGATGACAGCCTATGAAAGACAAAGGATATTGCTGCGTGCTGCTGATCTGTTTGAAAAGCACAATGATGAGCTTGCTGCTCTTGAGACTTGGGATAATGGGAAGCCATATGAACAATCTGCTCAAATCGAAATTCCAATGCTGGTTCGCCTATTTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGATGGGCCATATCATGTGCAAACATTGCATGAACCCATTGGTGTTGCTGGTCAGATCATTCCGTGGAACTTCCCTCTTGTCATGTTTGCCTGGAAGGTTGGGCCAGCATTGGCCTGTGGTAACACCATTGTTCTCAAAACAGCTGAGCAGACTCCATTATCTGCTTTGTATGCATCAAAGTTGCTTCATGAGGCTGGACTTCCTCCTGGCGTTCTGAATGTAATATCTGGCTTTGGTCCTACCGCTGGTGCTGCCATTGCTAGTCACATGGACATAGATAAGCTTGCTTTCACTGGTTCAACCGAAACTGGAAAAGTTGTCCTTGAATTGGCAGCTAGAAGTAATCTTAAGCCTGTTACTCTGGAGCTTGGTGGGAAATCTCCTTTTATAGTATGCGAAGATGCTGATGTAGATGAGGCTGTTGAGCTAGCACACTTTGCATTATTCTTTAATCAGGGACAATGCTGCTGTGCTGGGTCTAGAACATTTGTACACGAACGTGTGTACGATGAATTTATTGAGAAAGCAAAGGCACGTGCTTTGAAGCGTGCTGTTGGTGATCCATTCAAGGGGGGAATAGAGCAAGGTCCTCAGATTGATTCAGAACAATTTCAGAAAATACTGAAGTATATTAGGTCCGGTGTTGAAAGTGGAGCTACTCTTGAAACTGGAGGAGATAGATTTGGCAACTCAGGCTTCTATATTCAGCCTACTGTCTTCTCAAATGTTAAGGATGACATGCTGATTGCAAAGGAAGAGATCTTTGGTCCAGTGCAAACCATATTAAAATTCAAGGACCTTGATGATGTGATTCAAAGAGCAAATAACACACACTATGGCCTTGCAGCAGGGGTGTTCACAAAAAACATTAACACAGCTAACACTTTGACTAGAGCATTGCGAGTTGGAACAGTGTGGATTAACTGCTTTGATACATTTGATGCAGCAATTCCCTTTGGAGGGTACAAAATGAGTGGCCAAGGAAGAGAAAAAGGAGAATACAGTCTCAAGAACTACTTGCAAGTGAAGGCTGTTGTTACATCCTTGAAGAACCCTGCTTGGCTTTGA
Predicted protein sequences of Glyma01g03820
>Glyma01g03820.1   sequence type=predicted peptide   gene model=Glyma01g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSMRISRLLSRSFLSASTTPLFSRGGSGALGAGLSKFSTAAAIEEPIKPPVKVEHTQLLIDGKFVDAATGKTFPTLDPRTGDVISHVAEGDHEDVDRAVAAARKAFDHGPWPKMTAYERQRILLRAADLFEKHNDELAALETWDNGKPYEQSAQIEIPMLVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLVMFAWKVGPALACGNTIVLKTAEQTPLSALYASKLLHEAGLPPGVLNVISGFGPTAGAAIASHMDIDKLAFTGSTETGKVVLELAARSNLKPVTLELGGKSPFIVCEDADVDEAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFIEKAKARALKRAVGDPFKGGIEQGPQIDSEQFQKILKYIRSGVESGATLETGGDRFGNSGFYIQPTVFSNVKDDMLIAKEEIFGPVQTILKFKDLDDVIQRANNTHYGLAAGVFTKNINTANTLTRALRVGTVWINCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTSLKNPAWL*






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