Glyma01g03580 - SoyBase

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Report for Sequence Feature Glyma01g03580

Feature Type:	gene_model
Chromosome:	Gm01
Start:	3090806
stop:	3093412
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g03580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23420	AT	Annotation by Michelle Graham. TAIR10: Plant-specific transcription factor YABBY family protein \| chr1:8317423-8319104 FORWARD LENGTH=231	SoyBase	E_val: 3.00E-71	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0381	KOG	HMG box-containing protein	JGI		ISS
PF04690	PFAM	YABBY protein	JGI		ISS
UniRef100_G7K086	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Axial regulator YABBY n=1 Tax=Medicago truncatula RepID=G7K086_MEDTR	SoyBase	E_val: 3.00E-127	ISS
UniRef100_I1J578	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J578_SOYBN	SoyBase	E_val: 8.00E-159	ISS

Expression Patterns of Glyma01g03580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g03580 not represented in the dataset	Glyma01g03580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g03580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g029300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g03580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g03580

Limit To All Plant Sequences

>Glyma01g03580.3   sequence type=transcript   gene model=Glyma01g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATGATGATTGATTATGAGTGTCCATCTTCAACTATAAATGCTTCCTTGTGTCAAAAGAACTACAATTTTATCTCTCTATCTCTTCTTTCTCTTCCTCTATCACATACACACTCTCTCACTTACAAGTTACAAATTCAGACAGATATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTATGTAGAATGTGGATTCTGTGCCACCATTTTAATGGTAAGTGTCCCAAGCAGCAGTTTGTCAATGGTGGTGACAGTAAAATGCGGACACTGCACAAGCGTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGCCATCTTGAGCCAAAAGAAAGTAGTTCAGAACAAGATGCTAACAAGACTTTGAAGAGACATAATGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGCCATTCCAATGAGTAATGTTGTCAATAAACCCCCAGAGAAGAGACAGAGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCCCACAGGGAAGCTTTTAGTACAGCAGCAAAAAACGTAAGGTCTAATTTTTTAAGCTGCTTATTAATTCAACTCATTTACAAATTAGGCAGTCTTGATTGACACACTTGTTGGGTTACAAGTGTGAGGTGAAGTCCCACATCGGATAAAAGTGGAAAGGTTGAGCACCATACAAGTGAGGAGAAGACCCATAAACCTGAACCTTAAGGTTTTGGGTTAGAGTGTGGTGTCAGGTCTCCTTATGTGATAACTCGTGCTCAATTGGGCCAATTTCCCCCCAACTCAGTGCAAAGAAGATGAAGAGAGCTGTAGCAGCCAGACAGATCAACATGTGGATCTTGACTCCCAAGTGGACCCTAATGCTGTGGTCAATGAAGAAGAAGGTCAAGGTTTACGTGGAAGAAAGGTCCCAAAGAATTCCATATTGGAAAGGACACCGTTTGAATGAAGAAAGTTCAGCTTATGTGACATAATTAACAAGAACGTTATTTTTTGTAACATTAAGGTTGCCACTAAATCCTTTTCCTAATGAAGAAAATATGCTCTTGGTAATGAAAACGAATTAAGTAGGCTGAGAGCTGACATTTTGAGACTTTAGGAAGTGCTTAAATTGATAGTTTTATCTGACACCTTTCTGTTCCAGTCCACCAGTTCTATTAATTAGTCTTCTTGACCACAAAGGGTTTTTTTTTTTTGGCTCACGTAAATGTTTATTTGTTGAAGTGTTGCTTGATATTAATTCAATAATTCTCAGACTCTCTGCATGTTATTAAGGGCTGTAACAGATAATGGCTACAGATTTTCGTGTTAGATAAATATAGGTCACGTTTATTGGAATTGGAAAT

>Glyma01g03580.4   sequence type=transcript   gene model=Glyma01g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATGATGATTGATTATGAGTGTCCATCTTCAACTATAAATGCTTCCTTGTGTCAAAAGAACTACAATTTTATCTCTCTATCTCTTCTTTCTCTTCCTCTATCACATACACACTCTCTCACTTACAAGTTACAAATTCAGACAGATATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTATGTAGAATGTGGATTCTGTGCCACCATTTTAATGGTAAGTGTCCCAAGCAGCAGTTTGTCAATGGTGGTGACAGTAAAATGCGGACACTGCACAAGCGTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGCCATCTTGAGCCAAAAGAAAGTAGTTCAGAACAAGATGCTAACAAGACTTTGAAGAGACATAATGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGCCATTCCAATGAGTAATGTTGTCAATAAACCCCCAGAGAAGAGACAGAGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCCCACAGGGAAGCTTTTAGTACAGCAGCAAAAAACTGTGAGGTGAAGTCCCACATCGGATAAAAGTGGAAAGGTTGAGCACCATACAAGTGAGGAGAAGACCCATAAACCTGAACCTTAAGGTTTTGGGTTAGAGTGTGGTGTCAGGTCTCCTTATGTGATAACTCGTGCTCAATTGGGCCAATTTCCCCCCAACTCAGTGCAAAGAAGATGAAGAGAGCTGTAGCAGCCAGACAGATCAACATGTGGATCTTGACTCCCAAGTGGACCCTAATGCTGTGGTCAATGAAGAAGAAGGTCAAGGTTTACGTGGAAGAAAGGTCCCAAAGAATTCCATATTGGAAAGGACACCGTTTGAATGAAGAAAGTTCAGCTTATGTGACATAATTAACAAGAACGTTATTTTTTGTAACATTAAGGTTGCCACTAAATCCTTTTCCTAATGAAGAAAATATGCTCTTGGTAATGAAAACGAATTAAGTAGGCTGAGAGCTGACATTTTGAGACTTTAGGAAGTGCTTAAATTGATAGTTTTATCTGACACCTTTCTGTTCCAGTCCACCAGTTCTATTAATTAGTCTTCTTGACCACAAAGGGTTTTTTTTTTTTGGCTCACGTAAATGTTTATTTGTTGAAGTGTTGCTTGATATTAATTCAATAATTCTCAGACTCTCTGCATGTTATTAAGGGCTGTAACAGATAATGGCTACAGATTTTCGTGTTAGATAAATATAGGTCACGTTTATTGGAATTGGAAAT

Coding sequences of Glyma01g03580

Limit To All Plant Sequences

>Glyma01g03580.2   sequence type=CDS   gene model=Glyma01g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATTGATTATGAGTGTCCATCTTCAACTATAAATGCTTCCTTGTGTCAAAAGAACTACAATTTTATCTCTCTATCTCTTCTTTCTCTTCCTCTATCACATACACACTCTCTCACTTACAAGTTACAAATTCAGACAGATATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTATGTAGAATGTGGATTCTGTGCCACCATTTTAATGGTAAGTGTCCCAAGCAGCAGTTTGTCAATGGTGGTGACAGTAAAATGCGGACACTGCACAAGCGTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGCCATCTTGAGCCAAAAGAAAGTAGTTCAGAACAAGATGCTAACAAGACTTTGAAGAGACATAATGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGCCATTCCAATGAGTAATGTTGTCAATAAACCCCCAGAGAAGAGACAGAGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCCCACAGGGAAGCTTTTAGTACAGCAGCAAAAAACTGGGCCAATTTCCCCCCAACTCAGTGCAAAGAAGATGAAGAGAGCTGTAGCAGCCAGACAGATCAACATGTGGATCTTGACTCCCAAGTGGACCCTAATGCTGTGGTCAATGAAGAAGAAGGTCAAGGTTTACGTGGAAGAAAGGTCCCAAAGAATTCCATATTGGAAAGGACACCGTTTGAATGA

>Glyma01g03580.3   sequence type=CDS   gene model=Glyma01g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATTGATTATGAGTGTCCATCTTCAACTATAAATGCTTCCTTGTGTCAAAAGAACTACAATTTTATCTCTCTATCTCTTCTTTCTCTTCCTCTATCACATACACACTCTCTCACTTACAAGTTACAAATTCAGACAGATATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTATGTAGAATGTGGATTCTGTGCCACCATTTTAATGGTAAGTGTCCCAAGCAGCAGTTTGTCAATGGTGGTGACAGTAAAATGCGGACACTGCACAAGCGTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGCCATCTTGAGCCAAAAGAAAGTAGTTCAGAACAAGATGCTAACAAGACTTTGAAGAGACATAATGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGCCATTCCAATGAGTAATGTTGTCAATAAACCCCCAGAGAAGAGACAGAGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCCCACAGGGAAGCTTTTAGTACAGCAGCAAAAAACGTAAGGTCTAATTTTTTAAGCTGCTTATTAATTCAACTCATTTACAAATTAGGCAGTCTTGATTGA

>Glyma01g03580.4   sequence type=CDS   gene model=Glyma01g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATTGATTATGAGTGTCCATCTTCAACTATAAATGCTTCCTTGTGTCAAAAGAACTACAATTTTATCTCTCTATCTCTTCTTTCTCTTCCTCTATCACATACACACTCTCTCACTTACAAGTTACAAATTCAGACAGATATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTATGTAGAATGTGGATTCTGTGCCACCATTTTAATGGTAAGTGTCCCAAGCAGCAGTTTGTCAATGGTGGTGACAGTAAAATGCGGACACTGCACAAGCGTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGCCATCTTGAGCCAAAAGAAAGTAGTTCAGAACAAGATGCTAACAAGACTTTGAAGAGACATAATGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGCCATTCCAATGAGTAATGTTGTCAATAAACCCCCAGAGAAGAGACAGAGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCCCACAGGGAAGCTTTTAGTACAGCAGCAAAAAACTGTGAGGTGAAGTCCCACATCGGATAA

Predicted protein sequences of Glyma01g03580

Limit To All Plant Sequences

>Glyma01g03580.2   sequence type=predicted peptide   gene model=Glyma01g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMIDYECPSSTINASLCQKNYNFISLSLLSLPLSHTHSLTYKLQIQTDMSTLNHLFDLPEQICYVECGFCATILMVSVPSSSLSMVVTVKCGHCTSVLSVNMMKASFVPFHLLASLSHLEPKESSSEQDANKTLKRHNASMMTYSDCEEEDAIPMSNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHREAFSTAAKNWANFPPTQCKEDEESCSSQTDQHVDLDSQVDPNAVVNEEEGQGLRGRKVPKNSILERTPFE*

>Glyma01g03580.3   sequence type=predicted peptide   gene model=Glyma01g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMIDYECPSSTINASLCQKNYNFISLSLLSLPLSHTHSLTYKLQIQTDMSTLNHLFDLPEQICYVECGFCATILMVSVPSSSLSMVVTVKCGHCTSVLSVNMMKASFVPFHLLASLSHLEPKESSSEQDANKTLKRHNASMMTYSDCEEEDAIPMSNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHREAFSTAAKNVRSNFLSCLLIQLIYKLGSLD*

>Glyma01g03580.4   sequence type=predicted peptide   gene model=Glyma01g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMIDYECPSSTINASLCQKNYNFISLSLLSLPLSHTHSLTYKLQIQTDMSTLNHLFDLPEQICYVECGFCATILMVSVPSSSLSMVVTVKCGHCTSVLSVNMMKASFVPFHLLASLSHLEPKESSSEQDANKTLKRHNASMMTYSDCEEEDAIPMSNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHREAFSTAAKNCEVKSHIG*

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