SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05670 | AT | Annotation by Michelle Graham. TAIR10: signal recognition particle binding | chr5:1695916-1697534 REVERSE LENGTH=260 | SoyBase | E_val: 7.00E-136 | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0007264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0031507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heterochromatin assembly | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0045787 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0046520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005047 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal recognition particle binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0090 | KOG | Signal recognition particle receptor, beta subunit (small G protein superfamily) | JGI | ISS | |
| PTHR19326 | Panther | SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT RELATED | JGI | ISS | |
| PF09439 | PFAM | Signal recognition particle receptor beta subunit | JGI | ISS | |
| UniRef100_G7JJT7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle receptor subunit beta n=1 Tax=Medicago truncatula RepID=G7JJT7_MEDTR | SoyBase | E_val: 7.00E-155 | ISS |
| UniRef100_I1J575 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J575_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g03540 not represented in the dataset |
Glyma01g03540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g04110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g029000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g03540.1 sequence type=CDS gene model=Glyma01g03540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAGTTGGAGCAGTGGAAGGAACAACTTTCTCACTTCGCTAACCTAGCTTTGGATCGTCTTCTCGAGGTTCCTCCGAATCAGCTCTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAATTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGATAGTTTTTGTGGTAGATGCTTTGGACTTTTTACCAAACTGCCGTGCTGCTTCAGAGTACCTTTATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCCAGTGCTTATTCTCTGCAACAAAACAGACAAAGTCACTGCTCATACTAAAGAGTTTATCCGAAAACAGATGGAGAAGGAAATAGACAAATTACGGGCATCAAGGAGTGCAATATCAGCAGCTGACATTGCAAATGAGTTCACCCTGGGGGTACCCGGTGAGCCATTTTTTTTTACCCAGTGCTCTAACAAAGTGACAACTGCAGATGCTTCTGGTTTAACTGGGGAAATATCTCAGCTGGAAGAGTTTATCAGAGAACATGTAAAGCAATAG
>Glyma01g03540.1 sequence type=predicted peptide gene model=Glyma01g03540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEELEQWKEQLSHFANLALDRLLEVPPNQLYAAAAIVIFTTLLLLSIRLFKRAKSNTVVLAGLSGSGKTVIFYQLRDGSTHQGTVTSMEPNEGTFILHNEKTRKGKIKPVHVVDVPGHSRLRPKLDEYLPQAAGIVFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPVLILCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAISAADIANEFTLGVPGEPFFFTQCSNKVTTADASGLTGEISQLEEFIREHVKQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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