Glyma01g03500 - SoyBase

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Report for Sequence Feature Glyma01g03500

Feature Type:	gene_model
Chromosome:	Gm01
Start:	3020778
stop:	3022182
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g03500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23390	AT	Annotation by Michelle Graham. TAIR10: Kelch repeat-containing F-box family protein \| chr1:8309449-8310633 REVERSE LENGTH=394	SoyBase	E_val: 7.00E-84	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_G7JXX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7JXX3_MEDTR	SoyBase	E_val: 2.00E-171	ISS
UniRef100_I1J572	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J572_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g03500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g03500

Paralog	Evidence	Comments
Glyma02g04130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g03500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g028800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g03500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g03500

Limit To All Plant Sequences

>Glyma01g03500.1   sequence type=CDS   gene model=Glyma01g03500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCGACAGCAGAAGCACCCATCCATGGGGATATCTTAGAGGCCATATTCTCGCACGTGCCACTCATCCACCTTGTGCCGGCCTCTCACGTGTCAAATTCCTGGAAGCGTGCGGTCTCCTCCTCCCTCGCTCACGTCAGACCCATCAAGCCATGGCTCATAGTCCTCACCCAGAGCCTCCGCCACTCGCACGTGACAACTCTCCACGCCTACGACCCCCGCTCGCACGTGTGGCTCCAAATAAAAAACACCGCACGTTCCCACGCTTCCCCCGTGCGATCCTCCCACTCGACGCTGTTCTACGCGCTCACCCCATCCGAGTTCAGCTTCTCCCTCGACGCGCTGCACCTGAAATGGCACTACGCGCCCTCCCCGCGCGTGTGGCGCACCAATCCCGTGGTTGCGCGCGTGGGATCGCGCGTGGTGGTGGCTGGCGGCGCGTGCGAGTTCGAGGACGATCCGCTCGCGGTGGAGATGTACGACGTAAATAGCCAAGCCTGGGAGGCGTGTCCCTCCATGCCGGCGCTGCTGAAAAGCTCGACGGCGTCCTCGTGGCTGTCGGTGGCAGTCGCCGGAGAAATCATGCACGTGACGGAGAAACACTCCGGAGTGACCTACTCGTTCGAAACTATTTCAAAAACGTGGAAAGGACCGTTTAGTTTGAGGCCTCATGAGAGTGTTTTCCACTGTGTCACCGGAACCCTAGGAGAGAGGTTGATGGTGGCGGGGCTGATAGGGAAAGTTGGGAACGTGAAAGGCGTGAAGCTGTGGGAGGTTCGGGTTCGGGGGGGATTAGGTTCGGGGATGGAGGAAGTGGGGGAGATGCCGAAGGAGATGGTTCGGAAGCTATTCAGTGGTTCGGAGTTAGGTTCGGTGGAGGTGACGTGGATTGGGGACTTTGTTTACGTGAGGAACACTTCCGAACCGGAGGAGCTGGTGTTGTGTGAAGTATTGAATCATTTGAATGGGGTTGGGTGCGAGTGGCGGAGTGTACGGAACGCCGCCGTTAGATGCGGTGCGAGGATGGTGTTTTGCGGCGGTAGTGTGTGCATGGAGGATCTGCAGAGGGCGGTGATGTCGGAGAATCCGACATTTTCCATGAAACATGTGTGA

Predicted protein sequences of Glyma01g03500

Limit To All Plant Sequences

>Glyma01g03500.1   sequence type=predicted peptide   gene model=Glyma01g03500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTAEAPIHGDILEAIFSHVPLIHLVPASHVSNSWKRAVSSSLAHVRPIKPWLIVLTQSLRHSHVTTLHAYDPRSHVWLQIKNTARSHASPVRSSHSTLFYALTPSEFSFSLDALHLKWHYAPSPRVWRTNPVVARVGSRVVVAGGACEFEDDPLAVEMYDVNSQAWEACPSMPALLKSSTASSWLSVAVAGEIMHVTEKHSGVTYSFETISKTWKGPFSLRPHESVFHCVTGTLGERLMVAGLIGKVGNVKGVKLWEVRVRGGLGSGMEEVGEMPKEMVRKLFSGSELGSVEVTWIGDFVYVRNTSEPEELVLCEVLNHLNGVGCEWRSVRNAAVRCGARMVFCGGSVCMEDLQRAVMSENPTFSMKHV*

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