SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G23360 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:8295421-8296893 REVERSE LENGTH=261 | SoyBase | E_val: 1.00E-116 | ISS |
| GO:0042372 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phylloquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| GO:0052624 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2-phytyl-1,4-naphthoquinone methyltransferase activity | SoyBase | N/A | ISS |
| KOG1540 | KOG | Ubiquinone biosynthesis methyltransferase COQ5 | JGI | ISS | |
| PTHR10108 | Panther | METHYLTRANSFERASE | JGI | ISS | |
| PTHR10108:SF236 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01209 | PFAM | ubiE/COQ5 methyltransferase family | JGI | ISS | |
| UniRef100_G7K058 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Menaquinone biosynthesis methyltransferase ubiE n=1 Tax=Medicago truncatula RepID=G7K058_MEDTR | SoyBase | E_val: 6.00E-142 | ISS |
| UniRef100_I1J566 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J566_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g03430 not represented in the dataset |
Glyma01g03430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g04200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g028200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g03430.1 sequence type=CDS gene model=Glyma01g03430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATATAAAGAATCGATGTGGAAAGCGCAGAACATGCCACATGGCGATGACGTTTGTTCCTTCTTCAACTTCTTCCACTTTCCGACCAACGTTGATTCGCTGCGCCAGCGCCAATGAGCGGCAGGCGCTGTTTAGCCGCATTGCTCCTGTCTATGATAACCTGAATGATTTGCTGAGCCTTGGGCAACACCGGATTTGGAAGAGAATGGCAGTGTCCTGGACTGGAGCGAAAATGGGAGACTGTGTGTTGGATGTTTGCTGTGGAAGTGGGGACTTATCCTTTCTCTTGTCCGACAAAGTTGGCTCTCATGGCAAGGTGATTGGTCTTGATTTCTCGAAGGATCAGCTATCCTTTGCCTTATCTCGGCAGCAATCACTTTCAAAGAATTGCTTCATGAATATCGAGTGGGTTGAAGGTGATGCTCTTGACTTGCCATTTTCTGATGGTTGGTTTGATGCTATCACTATGGGCTATGGTCTTCGAAATGTGGTTGATAAGCAAAAGGCCATGCAGGAAATTTTCCGCGTCCTAAAAACTGGCTCTACAGTATCTATCCTGGATTTTAATAAAAGCAATGAGTTGCTAACTTCTGCAGTTACGGAATGGATGATTGACAATATTGTTGTCCCTGTTGCCACTGGTTATGGTCTTTCAGAGGAATACAGATACCTCAAACGTTCAATAAGAGAATTTTTAACAGGGAAGGAGTTGGAGAAACTTGCCTTGGGAGTTGGATTTTCTGCTGCTCGACATTATGAGATTGGTGGAGGCCTCATGGGGTGTTTGGTAGCTAAGCGTTAG
>Glyma01g03430.1 sequence type=predicted peptide gene model=Glyma01g03430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNIKNRCGKRRTCHMAMTFVPSSTSSTFRPTLIRCASANERQALFSRIAPVYDNLNDLLSLGQHRIWKRMAVSWTGAKMGDCVLDVCCGSGDLSFLLSDKVGSHGKVIGLDFSKDQLSFALSRQQSLSKNCFMNIEWVEGDALDLPFSDGWFDAITMGYGLRNVVDKQKAMQEIFRVLKTGSTVSILDFNKSNELLTSAVTEWMIDNIVVPVATGYGLSEEYRYLKRSIREFLTGKELEKLALGVGFSAARHYEIGGGLMGCLVAKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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