SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22530 | AT | Annotation by Michelle Graham. TAIR10: Alkaline-phosphatase-like family protein | chr2:9572971-9577441 REVERSE LENGTH=958 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008654 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| KOG2125 | KOG | Glycosylphosphatidylinositol anchor synthesis protein | JGI | ISS | |
| PTHR23072 | Panther | PHOSPHATIDYLINOSITOL GLYCAN-RELATED | JGI | ISS | |
| PF00884 | PFAM | Sulfatase | JGI | ISS | |
| PF01663 | PFAM | Type I phosphodiesterase / nucleotide pyrophosphatase | JGI | ISS | |
| UniRef100_G7JXN2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GPI ethanolamine phosphate transferase n=1 Tax=Medicago truncatula RepID=G7JXN2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336EEB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336EEB related cluster n=1 Tax=unknown RepID=UPI0002336EEB | SoyBase | E_val: 0 | ISS |
|
Glyma01g02900 not represented in the dataset |
Glyma01g02900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g04691 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g023700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g02900.2 sequence type=transcript gene model=Glyma01g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCAGACTGTTGTCCTTGTCATTCTGTTTGGAACTTTGACTGTTTGACTACATTGAGACATTTCCCCTTCATTTCCTTAAATTCTAACAATATATCACTAGGACTGTTTAATGGATGCACTTCAGAGATCATGTGATCTTTGATAACCCTATCAGATACTCCATTATCTAGGCTTGGATCATGTTGGACATATTGGTGGGCGGAACTGTGTGTTAATGGCTCCAAAACTTTTTGAAATGGATGAAGTGGTGAAGATGATTCATATAAATACTTTGCGAAATCTAGAAAATGATCAAAGGAAGACACTTCTGGTTGTAGTCAGTGACCATGGAATGACTGAGAATGGTAATCATGGGGGTTCATCCTACGAGGAAACAGACTCTATAGCTCTATTTATTGGGCCAAAAACCCATGCCTCTGGCCATTCATCATCCAATCATGACACAATTTTTCAGGTTGATATTGCACCAACAATAGCTTTACTTTTTGGTGTGCCAATTCCAAAAAATAATATTGGTGTTTTGATCTCTCAAATGGTTGACTCTCTGACAGATGACCAAAAGTTGAGGGCACTGCAGTTGAACTCATGGCAGTTGTTCAGATTACTTCAAGCACAATTGCCTGGTTTGTCCTGTAGAAATTTTCCATGTGATGCCTTCGTTACTAATAGTGGACCCACAATCAGTGAATGCAAAGGTAGCAAGGAGAAGTTGTTTTGTTGTTTGTATTTAAATGCTGCTACTCTTCATGATGCCTGGAAGGCTAAAGTAGTCACCAGGTCTAATAGCACGGAAGGTTATAACAGCATTGTTGCAGCATATAATGAGTTTCTGAGCTCTGCAAGTGAGTGGCTATCACACAAAGCAACTGACAAACCAATTAATTTACTTGTTCTTGGAGTTGCTGCTTTGGTTGTATCATGCTTGATACTTTTGGGAGTTGTGTTTGTCATCCACAAAGAAGTTCCTGCTTGGGAGACACAAGACCATGACAATTATGTGAAGCCATGGAAAATTGATGAGGTGTTCATTTTGTTTGGCATCCTGATCCTTGTCATCAGTATGGGATCAAGTTCCATGATTGAGGAAGAGCATTATATTTGGCATTTCCTAACATCCACCATTAACTTGTTATTTTTTCGTAAAGCAATACAGTCTTTGGAATTTAATAAAGCACATGATTTTCTCAATTCAATCAAGGAACAAAAGAATACATCAGTATCCCAAATAAGTTCCTTGTTCCTTATTCTTTTTTCTGGAAGAATTTTGAGAGGCTGGCATCAAGGTGGTGTAAATTGGACTAACCTTCCTGACATTTCGAAGTGGCTTGAGCAGGCTGGCAACCAATATATAAACTTGATTCAGATAGCATCATGTGCCATGGTCATCATAATGGGAATATCTGTATTGTTCTTAATGCAGTCTAAAACAAAAGTGTTAACAGGGATTGGGCTCAGTTTGTTAATGTCTGGTTTGTTTGTATTACAACATTTTATGAAACATCCGGACATGTCTGCCTCATACAATAAGGATGCCAACTTATCAGTACAAATACTCTTTGCCGTTCTGGGAATCACCACTATTGCAGTTGTATTGGTTTTGCCATGGATTATGCCTATGCAAACTCCCGACATATGCTCAAGGAAAAACTTCTACATGTCTGCTTCTGTTCCTGTTGAAATTCAGAACTCGACACCAATTTTGGTATTGAAAGATTCCTTGTACATAGTTGGATGCTTGTACATTACTTCCTGGTGTCTTCTGCAGTTGTTGCTTCAACAATCCATCAATGCGGTGCCTGTGTTGTTACTCTTTATTCAATTCTTGGCCAGCATGCTTACTTTTTCTTCCAATGGGTCATGTCATAAGCAGTGGGTTGAGATTACTGCTCTGTACAATCTGGGAATGGCAGGCCATTTTGCTCTTGGGAACAGTAATACACTAGCTACAATTGATGTGGCTGGAGCTTTTATTGGAATTTCAAGTCACTCAACCTTCCTTTCAGGTCTTCTAATGTTCATTATTACTTATGCAACCCCAATGTTATTCTTTCTTAGTATGGTGCTGTATGTCTCTGTCAAGGCCACAATCTATCCACTAGTTATCAAGAAAGGAAATTCTGGAGAAATTCTCAAGACCCTTCTTGGATTTCCTTGCTTAGTACCGCTGACCATAAATTCTGTTCTCATGACTGTGTACACGATCATCTTGCTGTTGATGAGGAATCATTTATTTATTTGGAGTGTTTTTTCTCCCAAGTACCTTTATGTTTGTGCTGCAACTGCATGTGTCTATGTCGGGATCTGCATTGTAGTTGTTACTGTGATCCATACATACATTGTGCTTTTTTGGCTGAGAAAGAGTTTCTCCATAAGTGGCAAGGCAAAAGGTACGTGGTGGTCATCGAAGTTAAGAACAAATTAGTAGTGAAGTGTCAAAAAACAATTTTGACTCTTAACTGGCTTGATTAATAAGTAAATATTGCTTTTCCTTTTTCTTTTTGAGGAGGGTGGTGGAATATAGAAATCTGATTTCTCACTACACCTACCTGCATCTTTCTAATGAATAATTTACTGTAGAACTGTAAATTCATTGGTGAAGTATTGAAGTAGTATATAATTGATTGACATAATCTCACTTTTACACGCACACACTATCTGAGGTATGCATATCTTCATTGCAAAATAAAAATCTGGATACACAATAACCAGTAGTGGACCTTTTGTCTATGGGGCATCCA
>Glyma01g02900.1 sequence type=CDS gene model=Glyma01g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCAATTTCATGCACGAAGCTGACACTGTTCAGCTTAGCAGCGGTTGCGATTCAGTTCATCGGTCTCTCCATCTTCGTTTTCGGCTTCTTCCCCGTCAAACCACTTCTCTCCGGTTACAGTGGCTGCGAGAGTTTCCGACGACCAACCTGCGATAACGATGGCGCTGCAAATCAGAGCTACGCGTCTCTCTCTCCAGATCGCCGCAGGTTTTTATATCAGGAAGGATCCGAGATTCCTCCTTTGTATGATCGACTTGTCTTAATGGTTATTGATGGTCTTCCAGCGGAATTTGTGCTTGGCAAGAAGGGTCAGCCTCCTAGCAAGGCTTTTATGGAAGCTATGCCATATACACAGTCATTATTGGCAAGTGGTATGGCTGTTGGATATCATGCAATTGCTGCTGCTCCAACCGTTACAATGCCTCGATTGAAGGCTATGGTTTCTGGAGCAATTGGGGGTTTCCTGGATGTGGCTTTCAACTTTAACACCCTGGCTTATTTAGATGACAATCTTGTTGCACAGTTCTTTAAAATTGGGTGGAAAATGGTTATGCATGGTGATGATACATGGCTCAGGTTATTTCCTGGTTTATTTGCAAGACATGATGGAGTTAGCAGTTTTTTTGTTAAAGACACCGTACAAGTAGATCAAAATGTGTCTCGACATCTTGGTGATGAACTTAGCAGAGATGATTGGAATTTTCTGATACTCCATTATCTAGGCTTGGATCATGTTGGACATATTGGTGGGCGGAACTGTGTGTTAATGGCTCCAAAACTTTTTGAAATGGATGAAGTGGTGAAGATGATTCATATAAATACTTTGCGAAATCTAGAAAATGATCAAAGGAAGACACTTCTGGTTGTAGTCAGTGACCATGGAATGACTGAGAATGGTAATCATGGGGGTTCATCCTACGAGGAAACAGACTCTATAGCTCTATTTATTGGGCCAAAAACCCATGCCTCTGGCCATTCATCATCCAATCATGACACAATTTTTCAGGTTGATATTGCACCAACAATAGCTTTACTTTTTGGTGTGCCAATTCCAAAAAATAATATTGGTGTTTTGATCTCTCAAATGGTTGACTCTCTGACAGATGACCAAAAGTTGAGGGCACTGCAGTTGAACTCATGGCAGTTGTTCAGATTACTTCAAGCACAATTGCCTGGTTTGTCCTGTAGAAATTTTCCATGTGATGCCTTCGTTACTAATAGTGGACCCACAATCAGTGAATGCAAAGGTAGCAAGGAGAAGTTGTTTTGTTGTTTGTATTTAAATGCTGCTACTCTTCATGATGCCTGGAAGGCTAAAGTAGTCACCAGGTCTAATAGCACGGAAGGTTATAACAGCATTGTTGCAGCATATAATGAGTTTCTGAGCTCTGCAAGTGAGTGGCTATCACACAAAGCAACTGACAAACCAATTAATTTACTTGTTCTTGGAGTTGCTGCTTTGGTTGTATCATGCTTGATACTTTTGGGAGTTGTGTTTGTCATCCACAAAGAAGTTCCTGCTTGGGAGACACAAGACCATGACAATTATGTGAAGCCATGGAAAATTGATGAGGTGTTCATTTTGTTTGGCATCCTGATCCTTGTCATCAGTATGGGATCAAGTTCCATGATTGAGGAAGAGCATTATATTTGGCATTTCCTAACATCCACCATTAACTTGTTATTTTTTCGTAAAGCAATACAGTCTTTGGAATTTAATAAAGCACATGATTTTCTCAATTCAATCAAGGAACAAAAGAATACATCAGTATCCCAAATAAGTTCCTTGTTCCTTATTCTTTTTTCTGGAAGAATTTTGAGAGGCTGGCATCAAGGTGGTGTAAATTGGACTAACCTTCCTGACATTTCGAAGTGGCTTGAGCAGGCTGGCAACCAATATATAAACTTGATTCAGATAGCATCATGTGCCATGGTCATCATAATGGGAATATCTGTATTGTTCTTAATGCAGTCTAAAACAAAAGTGTTAACAGGGATTGGGCTCAGTTTGTTAATGTCTGGTTTGTTTGTATTACAACATTTTATGAAACATCCGGACATGTCTGCCTCATACAATAAGGATGCCAACTTATCAGTACAAATACTCTTTGCCGTTCTGGGAATCACCACTATTGCAGTTGTATTGGTTTTGCCATGGATTATGCCTATGCAAACTCCCGACATATGCTCAAGGAAAAACTTCTACATGTCTGCTTCTGTTCCTGTTGAAATTCAGAACTCGACACCAATTTTGGTATTGAAAGATTCCTTGTACATAGTTGGATGCTTGTACATTACTTCCTGGTGTCTTCTGCAGTTGTTGCTTCAACAATCCATCAATGCGGTGCCTGTGTTGTTACTCTTTATTCAATTCTTGGCCAGCATGCTTACTTTTTCTTCCAATGGGTCATGTCATAAGCAGTGGGTTGAGATTACTGCTCTGTACAATCTGGGAATGGCAGGCCATTTTGCTCTTGGGAACAGTAATACACTAGCTACAATTGATGTGGCTGGAGCTTTTATTGGAATTTCAAGTCACTCAACCTTCCTTTCAGGTCTTCTAATGTTCATTATTACTTATGCAACCCCAATGTTATTCTTTCTTAGTATGGTGCTGTATGTCTCTGTCAAGGCCACAATCTATCCACTAGTTATCAAGAAAGGAAATTCTGGAGAAATTCTCAAGACCCTTCTTGGATTTCCTTGCTTAGTACCGCTGACCATAAATTCTGTTCTCATGACTGTGTACACGATCATCTTGCTGTTGATGAGGAATCATTTATTTATTTGGAGTGTTTTTTCTCCCAAGTACCTTTATGTTTGTGCTGCAACTGCATGTGTCTATGTCGGGATCTGCATTGTAGTTGTTACTGTGATCCATACATACATTGTGCTTTTTTGGCTGAGAAAGAGTTTCTCCATAAGTGGCAAGGCAAAAGGTACGTGGTGGTCATCGAAGTTAAGAACAAATTAG >Glyma01g02900.2 sequence type=CDS gene model=Glyma01g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCAAAACTTTTTGAAATGGATGAAGTGGTGAAGATGATTCATATAAATACTTTGCGAAATCTAGAAAATGATCAAAGGAAGACACTTCTGGTTGTAGTCAGTGACCATGGAATGACTGAGAATGGTAATCATGGGGGTTCATCCTACGAGGAAACAGACTCTATAGCTCTATTTATTGGGCCAAAAACCCATGCCTCTGGCCATTCATCATCCAATCATGACACAATTTTTCAGGTTGATATTGCACCAACAATAGCTTTACTTTTTGGTGTGCCAATTCCAAAAAATAATATTGGTGTTTTGATCTCTCAAATGGTTGACTCTCTGACAGATGACCAAAAGTTGAGGGCACTGCAGTTGAACTCATGGCAGTTGTTCAGATTACTTCAAGCACAATTGCCTGGTTTGTCCTGTAGAAATTTTCCATGTGATGCCTTCGTTACTAATAGTGGACCCACAATCAGTGAATGCAAAGGTAGCAAGGAGAAGTTGTTTTGTTGTTTGTATTTAAATGCTGCTACTCTTCATGATGCCTGGAAGGCTAAAGTAGTCACCAGGTCTAATAGCACGGAAGGTTATAACAGCATTGTTGCAGCATATAATGAGTTTCTGAGCTCTGCAAGTGAGTGGCTATCACACAAAGCAACTGACAAACCAATTAATTTACTTGTTCTTGGAGTTGCTGCTTTGGTTGTATCATGCTTGATACTTTTGGGAGTTGTGTTTGTCATCCACAAAGAAGTTCCTGCTTGGGAGACACAAGACCATGACAATTATGTGAAGCCATGGAAAATTGATGAGGTGTTCATTTTGTTTGGCATCCTGATCCTTGTCATCAGTATGGGATCAAGTTCCATGATTGAGGAAGAGCATTATATTTGGCATTTCCTAACATCCACCATTAACTTGTTATTTTTTCGTAAAGCAATACAGTCTTTGGAATTTAATAAAGCACATGATTTTCTCAATTCAATCAAGGAACAAAAGAATACATCAGTATCCCAAATAAGTTCCTTGTTCCTTATTCTTTTTTCTGGAAGAATTTTGAGAGGCTGGCATCAAGGTGGTGTAAATTGGACTAACCTTCCTGACATTTCGAAGTGGCTTGAGCAGGCTGGCAACCAATATATAAACTTGATTCAGATAGCATCATGTGCCATGGTCATCATAATGGGAATATCTGTATTGTTCTTAATGCAGTCTAAAACAAAAGTGTTAACAGGGATTGGGCTCAGTTTGTTAATGTCTGGTTTGTTTGTATTACAACATTTTATGAAACATCCGGACATGTCTGCCTCATACAATAAGGATGCCAACTTATCAGTACAAATACTCTTTGCCGTTCTGGGAATCACCACTATTGCAGTTGTATTGGTTTTGCCATGGATTATGCCTATGCAAACTCCCGACATATGCTCAAGGAAAAACTTCTACATGTCTGCTTCTGTTCCTGTTGAAATTCAGAACTCGACACCAATTTTGGTATTGAAAGATTCCTTGTACATAGTTGGATGCTTGTACATTACTTCCTGGTGTCTTCTGCAGTTGTTGCTTCAACAATCCATCAATGCGGTGCCTGTGTTGTTACTCTTTATTCAATTCTTGGCCAGCATGCTTACTTTTTCTTCCAATGGGTCATGTCATAAGCAGTGGGTTGAGATTACTGCTCTGTACAATCTGGGAATGGCAGGCCATTTTGCTCTTGGGAACAGTAATACACTAGCTACAATTGATGTGGCTGGAGCTTTTATTGGAATTTCAAGTCACTCAACCTTCCTTTCAGGTCTTCTAATGTTCATTATTACTTATGCAACCCCAATGTTATTCTTTCTTAGTATGGTGCTGTATGTCTCTGTCAAGGCCACAATCTATCCACTAGTTATCAAGAAAGGAAATTCTGGAGAAATTCTCAAGACCCTTCTTGGATTTCCTTGCTTAGTACCGCTGACCATAAATTCTGTTCTCATGACTGTGTACACGATCATCTTGCTGTTGATGAGGAATCATTTATTTATTTGGAGTGTTTTTTCTCCCAAGTACCTTTATGTTTGTGCTGCAACTGCATGTGTCTATGTCGGGATCTGCATTGTAGTTGTTACTGTGATCCATACATACATTGTGCTTTTTTGGCTGAGAAAGAGTTTCTCCATAAGTGGCAAGGCAAAAGGTACGTGGTGGTCATCGAAGTTAAGAACAAATTAG
>Glyma01g02900.1 sequence type=predicted peptide gene model=Glyma01g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSISCTKLTLFSLAAVAIQFIGLSIFVFGFFPVKPLLSGYSGCESFRRPTCDNDGAANQSYASLSPDRRRFLYQEGSEIPPLYDRLVLMVIDGLPAEFVLGKKGQPPSKAFMEAMPYTQSLLASGMAVGYHAIAAAPTVTMPRLKAMVSGAIGGFLDVAFNFNTLAYLDDNLVAQFFKIGWKMVMHGDDTWLRLFPGLFARHDGVSSFFVKDTVQVDQNVSRHLGDELSRDDWNFLILHYLGLDHVGHIGGRNCVLMAPKLFEMDEVVKMIHINTLRNLENDQRKTLLVVVSDHGMTENGNHGGSSYEETDSIALFIGPKTHASGHSSSNHDTIFQVDIAPTIALLFGVPIPKNNIGVLISQMVDSLTDDQKLRALQLNSWQLFRLLQAQLPGLSCRNFPCDAFVTNSGPTISECKGSKEKLFCCLYLNAATLHDAWKAKVVTRSNSTEGYNSIVAAYNEFLSSASEWLSHKATDKPINLLVLGVAALVVSCLILLGVVFVIHKEVPAWETQDHDNYVKPWKIDEVFILFGILILVISMGSSSMIEEEHYIWHFLTSTINLLFFRKAIQSLEFNKAHDFLNSIKEQKNTSVSQISSLFLILFSGRILRGWHQGGVNWTNLPDISKWLEQAGNQYINLIQIASCAMVIIMGISVLFLMQSKTKVLTGIGLSLLMSGLFVLQHFMKHPDMSASYNKDANLSVQILFAVLGITTIAVVLVLPWIMPMQTPDICSRKNFYMSASVPVEIQNSTPILVLKDSLYIVGCLYITSWCLLQLLLQQSINAVPVLLLFIQFLASMLTFSSNGSCHKQWVEITALYNLGMAGHFALGNSNTLATIDVAGAFIGISSHSTFLSGLLMFIITYATPMLFFLSMVLYVSVKATIYPLVIKKGNSGEILKTLLGFPCLVPLTINSVLMTVYTIILLLMRNHLFIWSVFSPKYLYVCAATACVYVGICIVVVTVIHTYIVLFWLRKSFSISGKAKGTWWSSKLRTN* >Glyma01g02900.2 sequence type=predicted peptide gene model=Glyma01g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPKLFEMDEVVKMIHINTLRNLENDQRKTLLVVVSDHGMTENGNHGGSSYEETDSIALFIGPKTHASGHSSSNHDTIFQVDIAPTIALLFGVPIPKNNIGVLISQMVDSLTDDQKLRALQLNSWQLFRLLQAQLPGLSCRNFPCDAFVTNSGPTISECKGSKEKLFCCLYLNAATLHDAWKAKVVTRSNSTEGYNSIVAAYNEFLSSASEWLSHKATDKPINLLVLGVAALVVSCLILLGVVFVIHKEVPAWETQDHDNYVKPWKIDEVFILFGILILVISMGSSSMIEEEHYIWHFLTSTINLLFFRKAIQSLEFNKAHDFLNSIKEQKNTSVSQISSLFLILFSGRILRGWHQGGVNWTNLPDISKWLEQAGNQYINLIQIASCAMVIIMGISVLFLMQSKTKVLTGIGLSLLMSGLFVLQHFMKHPDMSASYNKDANLSVQILFAVLGITTIAVVLVLPWIMPMQTPDICSRKNFYMSASVPVEIQNSTPILVLKDSLYIVGCLYITSWCLLQLLLQQSINAVPVLLLFIQFLASMLTFSSNGSCHKQWVEITALYNLGMAGHFALGNSNTLATIDVAGAFIGISSHSTFLSGLLMFIITYATPMLFFLSMVLYVSVKATIYPLVIKKGNSGEILKTLLGFPCLVPLTINSVLMTVYTIILLLMRNHLFIWSVFSPKYLYVCAATACVYVGICIVVVTVIHTYIVLFWLRKSFSISGKAKGTWWSSKLRTN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
