Report for Sequence Feature Glyma01g02880
Feature Type: gene_model
Chromosome: Gm01
Start: 2360198
stop: 2366406
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g02880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G22540 AT
Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240
SoyBase E_val: 4.00E-115 ISS
GO:0000165 GO-bp
Annotation by Michelle Graham. GO Biological Process: MAPK cascade
SoyBase N/A ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0006612 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane
SoyBase N/A ISS
GO:0009266 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus
SoyBase N/A ISS
GO:0009556 GO-bp
Annotation by Michelle Graham. GO Biological Process: microsporogenesis
SoyBase N/A ISS
GO:0009617 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to bacterium
SoyBase N/A ISS
GO:0009862 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009867 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009910 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development
SoyBase N/A ISS
GO:0009965 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis
SoyBase N/A ISS
GO:0010076 GO-bp
Annotation by Michelle Graham. GO Biological Process: maintenance of floral meristem identity
SoyBase N/A ISS
GO:0010310 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process
SoyBase N/A ISS
GO:0010363 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response
SoyBase N/A ISS
GO:0010582 GO-bp
Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy
SoyBase N/A ISS
GO:0030154 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell differentiation
SoyBase N/A ISS
GO:0031348 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response
SoyBase N/A ISS
GO:0035304 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0048438 GO-bp
Annotation by Michelle Graham. GO Biological Process: floral whorl development
SoyBase N/A ISS
GO:0048481 GO-bp
Annotation by Michelle Graham. GO Biological Process: ovule development
SoyBase N/A ISS
GO:0052543 GO-bp
Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0000900 GO-mf
Annotation by Michelle Graham. GO Molecular Function: translation repressor activity, nucleic acid binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG0014
KOG
MADS box transcription factor
JGI ISS
PTHR11945 Panther
MADS BOX PROTEIN
JGI ISS
PTHR11945:SF75 Panther
SVP (SHORT VEGETATIVE PHASE), TRANSCRIPTION FACTOR
JGI ISS
PF00319 PFAM
SRF-type transcription factor (DNA-binding and dimerisation domain)
JGI ISS
PF01486 PFAM
K-box region
JGI ISS
UniRef100_E3NYP9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Short vegetative phase-like protein n=2 Tax=Glycine max RepID=E3NYP9_SOYBN
SoyBase E_val: 1.00E-157 ISS
UniRef100_I1J514 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J514_SOYBN
SoyBase E_val: 2.00E-162 ISS
Expression Patterns of Glyma01g02880
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g02880
Paralog Evidence Comments
Glyma02g04710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g02880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g023500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g02880
Transcripts of Glyma01g02880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g02880.2 sequence type=transcript gene model=Glyma01g02880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CCTTTGGGAGATGAGCCAAAACAGTGTTTCGCCATAAAAGGGTATACCTTTTCCACACTTCCACACGCTCTCCTTCTCTCTCTTCCCTTCATTGGTTTGTGGCTTTCAACCCCAAAGCTGGAACCATCTAAACAAGCCAAACCAAACAGCACCAAAACCAAAATTCCTAATATCAACGTACGCCTTCCCCCCGATAAGGAAAGTAAAATCCACAAGTACATTCAGCGATAAATTCCTTGCTCCGCTACTAAAACTCTCTCTTTCAAGTTTTAACAACACCCCACCACCAACTCCATCTCTTCTATCCCCAACATCACTCAAAAAAAAAATTTAAAAAATTTCCCTCATACACCTTCTCCCATGATCTGCAAGCGAAGCTTTGATTTCACAAAAGCTAAATTTAGTTAAACACCTGCATATTAAATTTTTCTGCTATATATGCACCACATGTCCCTCTCACACTAAACAAAAACACCACCCTTTGCTTTTTGCTTTTCATAAGAACTTCCATAAATAGTCAACGACTCAGCCTTCCTTTGGTTTTTTTTTAGATTAAGGTGAAAGGGTAGTGCTCATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACCGCGAGGCAGGTCACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTCTGTGTGATGCTGATGTTGCCCTCATAATCTTCTCTTCCACTGGGAAACTCTTTGAGTACTCAAGCTCGAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAATCTAGCAAGGATGGAGCAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTGCTCCAGATTGAGCAAGGAAGTTGCCGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGATGTCACTTGAAACTGGATTGGGCCGTATAATAGAAAAGAAGGGAGAGAAGATTATGAGTGAGATCGCTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTCAAACGTCACTCTTCGGAGTCTGTCACGTACGTTTGCAATTCCACTGGACTCCCCCAAGACTATGAAAGCTCAGATACTTCGCTCAAATTGGGGCTACCATACTCCGGCTGATGAGAAAGTGTGTGAGGAGATAAAATTAACTCAAGCAAAAGTGCACAAGATTATGGTCTAAATTTCATTAATGATTATGTCTCTAGTATGTCCCCGTGGTGTGTATAGGTAGTATAAATATTAGTAAATAGTAAGGACTTATGTTATGGGGTACTCTAATGTCATTCAGAATTAATTGTTTTTTAAAAAGAAAGCAATTCGAGTTATGTTTTTAATTGGACTTTTTTAGCTAGTGTAATCCTTGCATCTCTGCCTTACACGAGTAAAAGTATTTTAG
>Glyma01g02880.3 sequence type=transcript gene model=Glyma01g02880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTTTTCTCCATAATGTGACTTTGATATTGTCTTATGAAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAATCTAGCAAGGATGGAGCAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTGCTCCAGATTGAGCAAGGAAGTTGCCGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGATGTCACTTGAAACTGGATTGGGCCGTATAATAGAAAAGAAGGGAGAGAAGATTATGAGTGAGATCGCTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTCAAACGTCACGTGGCGGGGATAATTAATGGTCAAAGGCATGGTGGTGCCGAATCTGAGAACTTTGTTATGGATGAAGGTCAGTCTTCGGAGTCTGTCACGTACGTTTGCAATTCCACTGGACTCCCCCAAGACTATGAAAGCTCAGATACTTCGCTCAAATTGGGGCTACCATACTCCGGCTGATGAGAAAGTGTGTGAGGAGATAAAATTAACTCAAGCAAAAGTGCACAAGATTATGGTCTAAATTTCATTAATGATTATGTCTCTAGTATGTCCCCGTGGTGTGTATAGGTAGTATAAATATTAGTAAATAGTAAGGACTTATGTTATGGGGTACTCTAATGTCATTCAGAATTAATTGTTTTTTAAAAAGAAAGCAATTCGAGTTATGTTTTTAATTGGACTTTTTTAGCTAGTGTAATCCTTGCATCTCTGCCTTACACGAGTAAAAGTATTTTAG
Coding sequences of Glyma01g02880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g02880.1 sequence type=CDS gene model=Glyma01g02880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACCGCGAGGCAGGTCACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTCTGTGTGATGCTGATGTTGCCCTCATAATCTTCTCTTCCACTGGGAAACTCTTTGAGTACTCAAGCTCGAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAATCTAGCAAGGATGGAGCAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTGCTCCAGATTGAGCAAGGAAGTTGCCGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGATGTCACTTGAAACTGGATTGGGCCGTATAATAGAAAAGAAGGGAGAGAAGATTATGAGTGAGATCGCTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTCAAACGTCACGTGGCGGGGATAATTAATGGTCAAAGGCATGGTGGTGCCGAATCTGAGAACTTTGTTATGGATGAAGGTCAGTCTTCGGAGTCTGTCACGTACGTTTGCAATTCCACTGGACTCCCCCAAGACTATGAAAGCTCAGATACTTCGCTCAAATTGGGGCTACCATACTCCGGCTGA
>Glyma01g02880.2 sequence type=CDS gene model=Glyma01g02880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACCGCGAGGCAGGTCACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTCTGTGTGATGCTGATGTTGCCCTCATAATCTTCTCTTCCACTGGGAAACTCTTTGAGTACTCAAGCTCGAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAATCTAGCAAGGATGGAGCAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTGCTCCAGATTGAGCAAGGAAGTTGCCGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGATGTCACTTGAAACTGGATTGGGCCGTATAATAGAAAAGAAGGGAGAGAAGATTATGAGTGAGATCGCTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTCAAACGTCACTCTTCGGAGTCTGTCACGTACGTTTGCAATTCCACTGGACTCCCCCAAGACTATGAAAGCTCAGATACTTCGCTCAAATTGGGGCTACCATACTCCGGCTGA
>Glyma01g02880.3 sequence type=CDS gene model=Glyma01g02880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAATCTAGCAAGGATGGAGCAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTGCTCCAGATTGAGCAAGGAAGTTGCCGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGATGTCACTTGAAACTGGATTGGGCCGTATAATAGAAAAGAAGGGAGAGAAGATTATGAGTGAGATCGCTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTCAAACGTCACGTGGCGGGGATAATTAATGGTCAAAGGCATGGTGGTGCCGAATCTGAGAACTTTGTTATGGATGAAGGTCAGTCTTCGGAGTCTGTCACGTACGTTTGCAATTCCACTGGACTCCCCCAAGACTATGAAAGCTCAGATACTTCGCTCAAATTGGGGCTACCATACTCCGGCTGA
Predicted protein sequences of Glyma01g02880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g02880.1 sequence type=predicted peptide gene model=Glyma01g02880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSSSSMKEILERHHLHSKNLARMEQPSLELQLVENSNCSRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQLEMSLETGLGRIIEKKGEKIMSEIADLQRKGMLLMEENERLKRHVAGIINGQRHGGAESENFVMDEGQSSESVTYVCNSTGLPQDYESSDTSLKLGLPYSG*
>Glyma01g02880.2 sequence type=predicted peptide gene model=Glyma01g02880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSSSSMKEILERHHLHSKNLARMEQPSLELQLVENSNCSRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQLEMSLETGLGRIIEKKGEKIMSEIADLQRKGMLLMEENERLKRHSSESVTYVCNSTGLPQDYESSDTSLKLGLPYSG*
>Glyma01g02880.3 sequence type=predicted peptide gene model=Glyma01g02880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKEILERHHLHSKNLARMEQPSLELQLVENSNCSRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQLEMSLETGLGRIIEKKGEKIMSEIADLQRKGMLLMEENERLKRHVAGIINGQRHGGAESENFVMDEGQSSESVTYVCNSTGLPQDYESSDTSLKLGLPYSG*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
