SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65490 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26178003-26180309 REVERSE LENGTH=643 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2406 | KOG | MADS box transcription factor | JGI | ISS | |
| PTHR13060 | Panther | SGT1 PROTEIN (HSGT1) (SUPPRESSOR OF GCR2) | JGI | ISS | |
| PF07093 | PFAM | SGT1 protein | JGI | ISS | |
| UniRef100_G7JWE1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SGT1-like protein n=1 Tax=Medicago truncatula RepID=G7JWE1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L4S0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L4S0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g02800 not represented in the dataset |
Glyma01g02800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g33210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g022800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g02800.2 sequence type=transcript gene model=Glyma01g02800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGATATCGGCAGTAAAAACTTTGATCACCCGTAGTTACTCCGACGGCGACTTCCTCCTCATCGAGGCCGCCTTCCACCTCCCCCGCTGGCTCAACCCCGACAGCGCGCACCACCGCCTCTTCCTCCGCGACGGAAGCCTCCACATCGTGCCGCGTAACCGCCTCCCCAACCCCTCCCTCATTGACTCCCTCAACTTCATCGTTAATTCCCCTCACGAATCCCTCGCCTCCGACGGAATCCAGCGCGCCGTCAGAAAACGCATAAGTAATTACCCCGAACAAGCTAGGAAGAACATGCATAGGGTTAGGGTTAGGGTTCCGGTGTCCGTGGCGCAGGTTCTGAAGCACGAGCCGCGGCTAATTTCCCTTGCAGTGGAAGGGTTCTACGATAGAGATATAGACACGATGAAGTTCGCGTCGAGGATGGAGAGGTTTGTGGAGAGAGGGAAAGCGGAGGAGTTGGTGTGCGTTTCGGTGAAGATGTCGAGGGCGATGTACGCACAGCTGGTGCAGCAGAGGTTTCAGGCTCCCAAGTGTTACCCGGGGATGCCGGCTCGGAGCGAGAAGGAAGGGTTTGCGGAGGCGGAGCTGGGGATGAAGATAGCGTGTGGGTTGGAGATGATGTATCAGCAGCGGAAGCGCGACGGGGTGGAAGGGAAAGGGAGCTCTTGGGAGGCGTTTAGGAAGAGTTTGGAGAGTAGTGGGTACTTCCAAGGGATGCTTCCGGGTTCCTCTGAGTATCAGAGATTGATGCAGAGTGCTCAAGAGTATTATAGAAATACTTCTCTGCACTCTAAGGCCAGTGACTTGCTGAATGCTCTTGTTAGACGCATAGATGAAATTCTTGCTCTGCCTCATTTGGTGGATGATTTTAAGGATCAGGAGGTTCCTCCATCTGATGATGATTCCTGGCTTTATGGTGGAGAGGAAGAGTTGAACTCTGTTCTTATGGAAAGACAAAAGGAGATGGAACTATATGACTTAAAACACAAAAAGAAAGGGAAAGCAAAAGAGGGACAAGATGCTGGTCCATCATCTGCTTCGAATGCTGACGAGTTTGATCCTGGTGATATAGCAAAAACCATGCAGGCATTTGTCCATAAGCTGTCAAGTTACAAGGGTGCTGAAGCTCCTGAAGACAGGAATAAGGAAGTAGACCTTGATGTGGACCAATTTATTAAAGACATGGAATCAATAATGATGCATACAGACGGTGAAGTTGCCAACAGCAATATTGAAGAAGGATCGTCGTCTGACCTGGACTTTGATGATTCTGATGAGAGTGATATTGCTGAATTGGATGAGGATACTGAGGATGGAGAGGAAATTTTCATGCGGTCCTATTCTGATGCTATGAATGAAGAACTGAAGACAACCACCCTTCAGAAAAGTTTTGTTCGTGCTAATGAACAAATTCCAAAGAAGGATCAGGGAACGTCAAATGCATCAGAACATATTGTGGACGAGGATTTTTCTCCTGTAGATGTGGATGTAAATTTAGTAAAAAGCTTACTCGATTCCTTTTCTTCCCAGCAAGGGCTTCCTGGTCCAGCTTCCAATTTGCTTGGCCTCATGGGGGTGCAGTTACCACAAGATGGCAAGAAGGGCAAATGA
>Glyma01g02800.1 sequence type=CDS gene model=Glyma01g02800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATAGGGTTAGGGTTAGGGTTCCGGTGTCCGTGGCGCAGGTTCTGAAGCACGAGCCGCGGCTAATTTCCCTTGCAGTGGAAGGGTTCTACGATAGAGATATAGACACGATGAAGTTCGCGTCGAGGATGGAGAGGTTTGTGGAGAGAGGGAAAGCGGAGGAGTTGGTGTGCGTTTCGGTGAAGATGTCGAGGGCGATGTACGCACAGCTGGTGCAGCAGAGGTTTCAGGCTCCCAAGTGTTACCCGGGGATGCCGGCTCGGAGCGAGAAGGAAGGGTTTGCGGAGGCGGAGCTGGGGATGAAGATAGCGTGTGGGTTGGAGATGATGTATCAGCAGCGGAAGCGCGACGGGGTGGAAGGGAAAGGGAGCTCTTGGGAGGCGTTTAGGAAGAGTTTGGAGAGTAGTGGGTACTTCCAAGGGATGCTTCCGGGTTCCTCTGAGTATCAGAGATTGATGCAGAGTGCTCAAGAGTATTATAGAAATACTTCTCTGCACTCTAAGGCCAGTGACTTGCTGAATGCTCTTGTTAGACGCATAGATGAAATTCTTGCTCTGCCTCATTTGGTGGATGATTTTAAGGATCAGGAGGTTCCTCCATCTGATGATGATTCCTGGCTTTATGGTGGAGAGGAAGAGTTGAACTCTGTTCTTATGGAAAGACAAAAGGAGATGGAACTATATGACTTAAAACACAAAAAGAAAGGGAAAGCAAAAGAGGGACAAGATGCTGGTCCATCATCTGCTTCGAATGCTGACGAGTTTGATCCTGGTGATATAGCAAAAACCATGCAGGCATTTGTCCATAAGCTGTCAAGTTACAAGGGTGCTGAAGCTCCTGAAGACAGGAATAAGGAAGTAGACCTTGATGTGGACCAATTTATTAAAGACATGGAATCAATAATGATGCATACAGACGGTGAAGTTGCCAACAGCAATATTGAAGAAGGATCGTCGTCTGACCTGGACTTTGATGATTCTGATGAGAGTGATATTGCTGAATTGGATGAGGATACTGAGGATGGAGAGGAAATTTTCATGCGGTCCTATTCTGATGCTATGAATGAAGAACTGAAGACAACCACCCTTCAGAAAAGTTTTGTTCGTGCTAATGAACAAATTCCAAAGAAGGATCAGGGAACGTCAAATGCATCAGAACATATTGTGGACGAGGATTTTTCTCCTGTAGATGTGGATGTAAATTTAGTAAAAAGCTTACTCGATTCCTTTTCTTCCCAGCAAGGGCTTCCTGGTCCAGCTTCCAATTTGCTTGGCCTCATGGGGGTGCAGTTACCACAAGATGGCAAGAAGGGCAAATGA >Glyma01g02800.2 sequence type=CDS gene model=Glyma01g02800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGATATCGGCAGTAAAAACTTTGATCACCCGTAGTTACTCCGACGGCGACTTCCTCCTCATCGAGGCCGCCTTCCACCTCCCCCGCTGGCTCAACCCCGACAGCGCGCACCACCGCCTCTTCCTCCGCGACGGAAGCCTCCACATCGTGCCGCGTAACCGCCTCCCCAACCCCTCCCTCATTGACTCCCTCAACTTCATCGTTAATTCCCCTCACGAATCCCTCGCCTCCGACGGAATCCAGCGCGCCGTCAGAAAACGCATAAGTAATTACCCCGAACAAGCTAGGAAGAACATGCATAGGGTTAGGGTTAGGGTTCCGGTGTCCGTGGCGCAGGTTCTGAAGCACGAGCCGCGGCTAATTTCCCTTGCAGTGGAAGGGTTCTACGATAGAGATATAGACACGATGAAGTTCGCGTCGAGGATGGAGAGGTTTGTGGAGAGAGGGAAAGCGGAGGAGTTGGTGTGCGTTTCGGTGAAGATGTCGAGGGCGATGTACGCACAGCTGGTGCAGCAGAGGTTTCAGGCTCCCAAGTGTTACCCGGGGATGCCGGCTCGGAGCGAGAAGGAAGGGTTTGCGGAGGCGGAGCTGGGGATGAAGATAGCGTGTGGGTTGGAGATGATGTATCAGCAGCGGAAGCGCGACGGGGTGGAAGGGAAAGGGAGCTCTTGGGAGGCGTTTAGGAAGAGTTTGGAGAGTAGTGGGTACTTCCAAGGGATGCTTCCGGGTTCCTCTGAGTATCAGAGATTGATGCAGAGTGCTCAAGAGTATTATAGAAATACTTCTCTGCACTCTAAGGCCAGTGACTTGCTGAATGCTCTTGTTAGACGCATAGATGAAATTCTTGCTCTGCCTCATTTGGTGGATGATTTTAAGGATCAGGAGGTTCCTCCATCTGATGATGATTCCTGGCTTTATGGTGGAGAGGAAGAGTTGAACTCTGTTCTTATGGAAAGACAAAAGGAGATGGAACTATATGACTTAAAACACAAAAAGAAAGGGAAAGCAAAAGAGGGACAAGATGCTGGTCCATCATCTGCTTCGAATGCTGACGAGTTTGATCCTGGTGATATAGCAAAAACCATGCAGGCATTTGTCCATAAGCTGTCAAGTTACAAGGGTGCTGAAGCTCCTGAAGACAGGAATAAGGAAGTAGACCTTGATGTGGACCAATTTATTAAAGACATGGAATCAATAATGATGCATACAGACGGTGAAGTTGCCAACAGCAATATTGAAGAAGGATCGTCGTCTGACCTGGACTTTGATGATTCTGATGAGAGTGATATTGCTGAATTGGATGAGGATACTGAGGATGGAGAGGAAATTTTCATGCGGTCCTATTCTGATGCTATGAATGAAGAACTGAAGACAACCACCCTTCAGAAAAGTTTTGTTCGTGCTAATGAACAAATTCCAAAGAAGGATCAGGGAACGTCAAATGCATCAGAACATATTGTGGACGAGGATTTTTCTCCTGTAGATGTGGATGTAAATTTAGTAAAAAGCTTACTCGATTCCTTTTCTTCCCAGCAAGGGCTTCCTGGTCCAGCTTCCAATTTGCTTGGCCTCATGGGGGTGCAGTTACCACAAGATGGCAAGAAGGGCAAATGA
>Glyma01g02800.1 sequence type=predicted peptide gene model=Glyma01g02800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHRVRVRVPVSVAQVLKHEPRLISLAVEGFYDRDIDTMKFASRMERFVERGKAEELVCVSVKMSRAMYAQLVQQRFQAPKCYPGMPARSEKEGFAEAELGMKIACGLEMMYQQRKRDGVEGKGSSWEAFRKSLESSGYFQGMLPGSSEYQRLMQSAQEYYRNTSLHSKASDLLNALVRRIDEILALPHLVDDFKDQEVPPSDDDSWLYGGEEELNSVLMERQKEMELYDLKHKKKGKAKEGQDAGPSSASNADEFDPGDIAKTMQAFVHKLSSYKGAEAPEDRNKEVDLDVDQFIKDMESIMMHTDGEVANSNIEEGSSSDLDFDDSDESDIAELDEDTEDGEEIFMRSYSDAMNEELKTTTLQKSFVRANEQIPKKDQGTSNASEHIVDEDFSPVDVDVNLVKSLLDSFSSQQGLPGPASNLLGLMGVQLPQDGKKGK* >Glyma01g02800.2 sequence type=predicted peptide gene model=Glyma01g02800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSISAVKTLITRSYSDGDFLLIEAAFHLPRWLNPDSAHHRLFLRDGSLHIVPRNRLPNPSLIDSLNFIVNSPHESLASDGIQRAVRKRISNYPEQARKNMHRVRVRVPVSVAQVLKHEPRLISLAVEGFYDRDIDTMKFASRMERFVERGKAEELVCVSVKMSRAMYAQLVQQRFQAPKCYPGMPARSEKEGFAEAELGMKIACGLEMMYQQRKRDGVEGKGSSWEAFRKSLESSGYFQGMLPGSSEYQRLMQSAQEYYRNTSLHSKASDLLNALVRRIDEILALPHLVDDFKDQEVPPSDDDSWLYGGEEELNSVLMERQKEMELYDLKHKKKGKAKEGQDAGPSSASNADEFDPGDIAKTMQAFVHKLSSYKGAEAPEDRNKEVDLDVDQFIKDMESIMMHTDGEVANSNIEEGSSSDLDFDDSDESDIAELDEDTEDGEEIFMRSYSDAMNEELKTTTLQKSFVRANEQIPKKDQGTSNASEHIVDEDFSPVDVDVNLVKSLLDSFSSQQGLPGPASNLLGLMGVQLPQDGKKGK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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