Glyma01g02620 - SoyBase

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Report for Sequence Feature Glyma01g02620

Feature Type:	gene_model
Chromosome:	Gm01
Start:	2146051
stop:	2152449
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g02620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22610	AT	Annotation by Michelle Graham. TAIR10: Di-glucose binding protein with Kinesin motor domain \| chr2:9599550-9604626 FORWARD LENGTH=1062	SoyBase	E_val: 0	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0016572	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone phosphorylation	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0239	KOG	Kinesin (KAR3 subfamily)	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF171	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
PF11721	PFAM	Di-glucose binding within endoplasmic reticulum	JGI		ISS
UniRef100_G7KGK0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-4 n=1 Tax=Medicago truncatula RepID=G7KGK0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336EE1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336EE1 related cluster n=1 Tax=unknown RepID=UPI0002336EE1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g02620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g02620

Paralog	Evidence	Comments
Glyma09g33340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g02620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g021200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g02620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g02620

Limit To All Plant Sequences

>Glyma01g02620.1   sequence type=CDS   gene model=Glyma01g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGACTCAATCGAACGACGTTCAGCAATACCCACAAACCCTAATCTCAGAGCCTAAAGATTCTTCAATGCACGACGCCAACGAGTCCTTGTTCGATTCGATGGTTTGCGACTCCAGTTCAAGACTGGTCCCAACTGGGCTTACGAGATCTGGCAACGCAGAAGAGGAGTGTTTCATGTTTGTAAATGCGGGAGGGGATGCTTTTAGTGAAGCAGCTGGTGGAATAACGTTCCTGGGTGACACCTATTTTGATGGTGGCAACGTTATGCGTACCAATGAGCAAATAGTGGAGGGTGGAGACTACCCATTTATCTACCAATCAGCTCGGTTGGGAAGCTTTTGTTATAGGTTTGCTAATCTTCCTCCTGGAGACTACGTTGTTGATCTTCATTTTGTGGAGATCATTAACATAAATGGGCCAAAAGGAATGAGGGTGTTCAATGTATACATCCAAGATGAAAAGGTTCTATCTGAATTGGATATCTATGCAGTTGTTGGAGCCAATAAGCCATTACAGATGGTTGATTCAAGGGTGTCTGTTAAGGATGATGGGGTTATTCTCATAAGATTTGAAAGTATATCTGGAAGCCCAGTTGTTAGTGGGATTTGCATTAGAAGAGCAACGAAGGCGTCAGTTCCACAAGTGACAAGTGATTACATTAAATGTAGCTCCTGTGCTGCACAGATTGAAATTCCTTCATCACAGATGAAAGTTATGCAGGCAAAGTCTACAGCAAAGTACAAGAGCAAGATAAAAGAGCTCACAATGCAGTGCGATCTCAAGGCAAAAGAATGCTATGAGGCATGGATGTCATTAACAGCAAAAAATGAGCAATTGGAGGCAGTCCAGATGGAACTTGACAAAGTGACATTTAAGTTACTCACAACTGATCAAACTGTAGAGAAACAAGCTGAAAGCCTGAGGAATATTTCTAATAGGTATGAGCTTGATAAGAAGAAATGGGCAGAAGCAATTAACAGTTTACAAGAAAAAATTAAGTTGATGAAGAGTGATTATTCAAAACTTTCCTTTGAAGCGCATGAATGTGTTGATTCAATCCCCGAATTAAATAAGATGGTTTTTGCAGTTCAGGAATTGGTTAAGCAGTGTGAAGATCTCAAAGTGAAGTACAGCGAAGAGATGGCAAAGAGAAAGAAACTCTTCAATGAAGTTCAAGAGGCTAAAGGGAACATTAGGGTTTTCTGTCGATGTCGTCCATTGAATAAGGCTGAAATCTCAGCTGGAAGCAATACAGTTGTGGATTTTGATGCAGCAAAGGAAGGTTGCCTTGGAATTTTGACAAGTGGCTCCACCAAAAAATCTTTCAGATTTGACAGAGTTTATACACCAAAAGATGATCAAGTTGATGTTTTTGCTGATGCATCATCAATGGTAATCTCTGTACTGGATGGCTACAATGTTTGCATCTTTGCTTATGGGCAAACAGGAACAGGGAAGACATTCACCATGGAAGGAACACAGCAGAATAGAGGAGTAAATTACAGGACTCTTGAGCACTTGTTTAAAGTTAGTAAGGAAAGGAGTGAAACATTTTCATATGACATATCTGTTAGTGTGATAGAGGTTTACAATGAACAAATCAGAGACTTATTGGCTACAGGACAAACATCAAAGCGGTTGGAGATAAAACAAGCTTCTGAAGGATTTCATCATGTTCCTGGTGTTGTAGAAGCCAGGATTGATAACATAAATGAAGTGTGGAATGTACTGCAGGTCGGAAATAATGCTAGAGCAGTTGGAAGTAATAACGTTAATGAGCACAGCAGTCGATCTCACTGCCTGCTTTGTGTAACAGTAAAGGCTAAAAATTTGTTGAGTGGCGAATCTACCAAGAGCAAGCTTTGGCTTGTGGATTTGGCAGGTAGTGAGAGACTTGCAAAGACTGATGTGCAAGGGGAACGGCTTAAGGAAGCACAAAATATCAATCGATCTCTTTCTGCCCTTGGAGATGTAATATCCGCTTTAGCAGCGAAAAGTAGTCACATTCCATATAGGAACTCTAAACTGACACATTTACTTCAAGACTCACTAGGAGGTGACTCCAAAACTTTGATGTTTGTACAAATAAGTCCATCAGACCAGGACGTAGGTGAGACACTGAGCTCACTTAATTTTGCAACTAGAGTGAGGGGTGTTGAGTTAGGTCCTGTTAAGAAGCAAATTGATACAAGTGAAGTTCAAAAGATGAAAGCAATGCTTGAAAAAGCACGGAGTGAGTGCAGAATTAAAGATGAATCTATGCGAAAACTTGAAGAAAATTTGCAAAGCTTGGAGAGTAAGGCCAAAGGCAAGGATCAAATTTACAAAAATCTACAAGAAAAGATTCAAGAACTTGAGGGACAGATTGAGTTGAAAAGAGCCATGCAAAATGACTCAGAGAAAAAAATCTCTCAATTATCTGCCAAATTGAGAGGGAAAGAAGAAACCTGCGGTACTCTTCAACAAAAGGTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAGTCAGCAAGTTTTCAACAGAAGGTTTGGGATCTAGAGAAAAAACTGGAAGATCAGATGCAAGGGTCTGAGTCTGAATCTGCCATTTTGAAAGATAAGATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAGATGAAGGAACTGGAGGACAGGTACCGAGAGCGAGAGCAACAGTGGCAACAAACTCATTCTTTTGTGGATGCAGTAAAAGCAGCCACACCAGATGTATGTAAAAGCTGCATGAGGGAAGAATGTCCAAGTGAGATTGAGACTGGCATTTTAAGGTGTTCAGACTCGGTAAACCGCCAGATAAGTCAAGGTTCTTCTTTGTTCAAAGGGAATGATTCCACTCATAAGATAAGCCAAGGTTCTTTGTTCAAAGAGAATGATTCCACTCATAAGATAAGAAGCAAAAGAAGCAATGATGAAAACAACTTTGTCATGCCATCATCATTATTACATGATAGAAGAGTCGCAAGGAAATCTGATCCACCAAAAATAGTAAGGGGTGTGAGGCCAACACCAAGGCCAGTCACTGCTAATCCAGCCCCAGTGTCTCACAAGAGAGGTAGCACAAGCAGAGATCAGGTTCAAGGAATCAAAGAGAGGGACACTAAGAAGAAAATTTGGTCAAGATAG

Predicted protein sequences of Glyma01g02620

Limit To All Plant Sequences

>Glyma01g02620.1   sequence type=predicted peptide   gene model=Glyma01g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPTQSNDVQQYPQTLISEPKDSSMHDANESLFDSMVCDSSSRLVPTGLTRSGNAEEECFMFVNAGGDAFSEAAGGITFLGDTYFDGGNVMRTNEQIVEGGDYPFIYQSARLGSFCYRFANLPPGDYVVDLHFVEIININGPKGMRVFNVYIQDEKVLSELDIYAVVGANKPLQMVDSRVSVKDDGVILIRFESISGSPVVSGICIRRATKASVPQVTSDYIKCSSCAAQIEIPSSQMKVMQAKSTAKYKSKIKELTMQCDLKAKECYEAWMSLTAKNEQLEAVQMELDKVTFKLLTTDQTVEKQAESLRNISNRYELDKKKWAEAINSLQEKIKLMKSDYSKLSFEAHECVDSIPELNKMVFAVQELVKQCEDLKVKYSEEMAKRKKLFNEVQEAKGNIRVFCRCRPLNKAEISAGSNTVVDFDAAKEGCLGILTSGSTKKSFRFDRVYTPKDDQVDVFADASSMVISVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEHLFKVSKERSETFSYDISVSVIEVYNEQIRDLLATGQTSKRLEIKQASEGFHHVPGVVEARIDNINEVWNVLQVGNNARAVGSNNVNEHSSRSHCLLCVTVKAKNLLSGESTKSKLWLVDLAGSERLAKTDVQGERLKEAQNINRSLSALGDVISALAAKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSDQDVGETLSSLNFATRVRGVELGPVKKQIDTSEVQKMKAMLEKARSECRIKDESMRKLEENLQSLESKAKGKDQIYKNLQEKIQELEGQIELKRAMQNDSEKKISQLSAKLRGKEETCGTLQQKVKELEKKMKEQLQSESASFQQKVWDLEKKLEDQMQGSESESAILKDKIKELERKLKEQEQSSMSLLRQQMKELEDRYREREQQWQQTHSFVDAVKAATPDVCKSCMREECPSEIETGILRCSDSVNRQISQGSSLFKGNDSTHKISQGSLFKENDSTHKIRSKRSNDENNFVMPSSLLHDRRVARKSDPPKIVRGVRPTPRPVTANPAPVSHKRGSTSRDQVQGIKERDTKKKIWSR*

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