SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65670 | AT | Annotation by Michelle Graham. TAIR10: indole-3-acetic acid inducible 9 | chr5:26254463-26256134 FORWARD LENGTH=336 | SoyBase | E_val: 1.00E-144 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010050 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative phase change | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PF02309 | PFAM | AUX/IAA family | JGI | ISS | |
| UniRef100_G7LHT1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Indoleacetic acid-induced-like protein n=2 Tax=Medicago truncatula RepID=G7LHT1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J4W6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J4W6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g02350 not represented in the dataset |
Glyma01g02350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g33630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g019400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g02350.4 sequence type=transcript gene model=Glyma01g02350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGATCTCTCAAAGCTTCAAATTCTCCTTGGTGCGTACTTCAAATTCATCTTCTCCTACTCCTAACTGCTCTTCTTTTTTCAAATTCTCTGCGCGTTTCTGTTTCTCAGCACTTTCTGGTAGAACAATGCACGACATTTTGTTTTTTCTTTTAAAAAAACTCGTTTGGTTTGTTTGTGTGTTTGGAGTATGATGTCGCCGCCGGCGGTGGTAACGGAGGAGGAGGGGCGGAGCAACGTGTCGTCGACCGTGGCGTCCGGTTCTTCGCAATCCTTGGACCGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGAAATTACTTAGGGTTATCTGATTGCTCATCAGTTGATAGCAGTGCCTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCCGGATCCCAATCGCCTGAAAGGGAGCCGGATCTTTTCTCTTTAAGCCCAGCAAAGCTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACTAAAGACGGGATTTGCTTGTCGGCGCAAAAAACTGTTGTTTCTGGCAACAAAAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTCGCTGGTAATACAGGGATGAACGCAATGCTATCACCTAGGCCTTCTGGAGCTCAGCCTTCTGCTATGAAAGAAATACCAAGCAAGTTGCAAGAAAGGCCCTGTTCAACTAAGAATGGAACCGGTCATAACCATACAGGTGCTTCCATCAGTGGCAGCGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCTTTTAGGAAAAACTCGATGGCCACGACAACTAACAAGAACAATGATGAAGTGGATGGGAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACTTATCAGGAACTATCATCTGCCCTTGAGAAGATGTTCCTAAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAGGGATCTTCTGCATGGTTCTGAGTATGTTCTCACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCATTGACACTTGCAAAAGGCTGAAAATTATGAAAGGTTCTGATGCCATTGGTTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAGGCTATCCTGGACTGCTTGTTGTCTGATCAAAGTTTTATTGTTGGATCCGGAGAGGGAAAAGCAAAGGATGATGATATGACTGAATTCCCGGGCATTGGTGGTTTATCGCCCTTCTGCTGTTATTTGTTTTTATGGCCCTTAAGAGTTTCTCGTGGTATTATGTTAATTTGTTACCACTATAATATCATATGAAGCTACATTGGAAGGTTAGTGTTTGTGGAGTCTGTAATCATTGTAGGAATCTGTTTGTTTTGGACAAATTGAACATCTGTTACAGCCAACATACGGTTCTAACACTATATTTGTGATTTACATCACTCGCCCATTCTTTTCTTTCATGTTTTTCTTTAAATCTTGAACAGACATTATTTCATTTTACGGGTTTGAAAATGGGTCAGCAAATGCTTTGGGTAAGGTTATT >Glyma01g02350.5 sequence type=transcript gene model=Glyma01g02350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGATCTCTCAAAGCTTCAAATTCTCCTTGGTGCGTACTTCAAATTCATCTTCTCCTACTCCTAACTGCTCTTCTTTTTTCAAATTCTCTGCGCGTTTCTGTTTCTCAGCACTTTCTGGTAGAACAATGCACGACATTTTGTTTTTTCTTTTAAAAAAACTCGGTAAGGATTTTGTGTGAATGTGGATCTATTAAGCTTTTTTATTTTTTTATTTGCGGAAGAAACTGAGGTTATGAAGAAAGCTGAACTAGAAACAGGAAAAGAGAGCGGCGTGTGCTATTGTCATAAGTTTTCAGTTAATTACTAACTCAAAAGTTTGGTTTGTTTGTGTGTTTGGAGTATGATGTCGCCGCCGGCGGTGGTAACGGAGGAGGAGGGGCGGAGCAACGTGTCGTCGACCGTGGCGTCCGGTTCTTCGCAATCCTTGGACCGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGAAATTACTTAGGGTTATCTGATTGCTCATCAGTTGATAGCAGTGCCTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCCGGATCCCAATCGCCTGAAAGGGAGCCGGATCTTTTCTCTTTAAGCCCAGCAAAGCTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACTAAAGACGGGATTTGCTTGTCGGCGCAAAAAACTGTTGTTTCTGGCAACAAAAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTCGCTGGTAATACAGGGATGAACGCAATGCTATCACCTAGGCCTTCTGGAGCTCAGCCTTCTGCTATGAAAGAAATACCAAGCAAGTTGCAAGAAAGGCCCTGTTCAACTAAGAATGGAACCGGTCATAACCATACAGGTGCTTCCATCAGTGGCAGCGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCTTTTAGGAAAAACTCGATGGCCACGACAACTAACAAGAACAATGATGAAGTGGATGGGAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACTTATCAGGAACTATCATCTGCCCTTGAGAAGATGTTCCTAAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAGGGATCTTCTGCATGGTTCTGAGTATGTTCTCACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCATTGACACTTGCAAAAGGCTGAAAATTATGAAAGGTTCTGATGCCATTGGTTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAGGCTATCCTGGACTGCTTGTTGTCTGATCAAAGTTTTATTGTTGGATCCGGAGAGGGAAAAGCAAAGGATGATGATATGACTGAATTCCCGGGCATTGGTGGTTTATCGCCCTTCTGCTGTTATTTGTTTTTATGGCCCTTAAGAGTTTCTCGTGGTATTATGTTAATTTGTTACCACTATAATATCATATGAAGCTACATTGGAAGGTTAGTGTTTGTGGAGTCTGTAATCATTGTAGGAATCTGTTTGTTTTGGACAAATTGAACATCTGTTACAGCCAACATACGGTTCTAACACTATATTTGTGATTTACATCACTCGCCCATTCTTTTCTTTCATGTTTTTCTTTAAATCTTGAACAGACATTATTTCATTTTACGGGTTTGAAAATGGGTCAGCAAATGCTTTGGGTAAGGTTATT
>Glyma01g02350.3 sequence type=CDS gene model=Glyma01g02350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTCGCCGCCGGCGGTGGTAACGGAGGAGGAGGGGCGGAGCAACGTGTCGTCGACCGTGGCGTCCGGTTCTTCGCAATCCTTGGACCGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGAAATTACTTAGGGTTATCTGATTGCTCATCAGTTGATAGCAGTGCCTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCCGGATCCCAATCGCCTGAAAGGGAGCCGGATCTTTTCTCTTTAAGCCCAGCAAAGCTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACTAAAGACGGGATTTGCTTGTCGGCGCAAAAAACTGTTGTTTCTGGCAACAAAAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTCGCTGGTAATACAGGGATGAACGCAATGCTATCACCTAGGCCTTCTGGAGCTCAGCCTTCTGCTATGAAAGAAATACCAAGCAAGTTGCAAGAAAGGCCCTGTTCAACTAAGAATGGAACCGGTCATAACCATACAGGTGCTTCCATCAGTGGCAGCGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCTTTTAGGAAAAACTCGATGGCCACGACAACTAACAAGAACAATGATGAAGTGGATGGGAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACTTATCAGGAACTATCATCTGCCCTTGAGAAGATGTTCCTAAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAGGGATCTTCTGCATGGTTCTGAGTATGTTCTCACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCATTGACACTTGCAAAAGGCTGAAAATTATGAAAGGTTCTGATGCCATTGGTTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG >Glyma01g02350.4 sequence type=CDS gene model=Glyma01g02350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTCGCCGCCGGCGGTGGTAACGGAGGAGGAGGGGCGGAGCAACGTGTCGTCGACCGTGGCGTCCGGTTCTTCGCAATCCTTGGACCGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGAAATTACTTAGGGTTATCTGATTGCTCATCAGTTGATAGCAGTGCCTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCCGGATCCCAATCGCCTGAAAGGGAGCCGGATCTTTTCTCTTTAAGCCCAGCAAAGCTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACTAAAGACGGGATTTGCTTGTCGGCGCAAAAAACTGTTGTTTCTGGCAACAAAAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTCGCTGGTAATACAGGGATGAACGCAATGCTATCACCTAGGCCTTCTGGAGCTCAGCCTTCTGCTATGAAAGAAATACCAAGCAAGTTGCAAGAAAGGCCCTGTTCAACTAAGAATGGAACCGGTCATAACCATACAGGTGCTTCCATCAGTGGCAGCGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCTTTTAGGAAAAACTCGATGGCCACGACAACTAACAAGAACAATGATGAAGTGGATGGGAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACTTATCAGGAACTATCATCTGCCCTTGAGAAGATGTTCCTAAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAGGGATCTTCTGCATGGTTCTGAGTATGTTCTCACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCATTGACACTTGCAAAAGGCTGAAAATTATGAAAGGTTCTGATGCCATTGGTTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG >Glyma01g02350.5 sequence type=CDS gene model=Glyma01g02350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTCGCCGCCGGCGGTGGTAACGGAGGAGGAGGGGCGGAGCAACGTGTCGTCGACCGTGGCGTCCGGTTCTTCGCAATCCTTGGACCGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGAAATTACTTAGGGTTATCTGATTGCTCATCAGTTGATAGCAGTGCCTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCCGGATCCCAATCGCCTGAAAGGGAGCCGGATCTTTTCTCTTTAAGCCCAGCAAAGCTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACTAAAGACGGGATTTGCTTGTCGGCGCAAAAAACTGTTGTTTCTGGCAACAAAAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTCGCTGGTAATACAGGGATGAACGCAATGCTATCACCTAGGCCTTCTGGAGCTCAGCCTTCTGCTATGAAAGAAATACCAAGCAAGTTGCAAGAAAGGCCCTGTTCAACTAAGAATGGAACCGGTCATAACCATACAGGTGCTTCCATCAGTGGCAGCGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCTTTTAGGAAAAACTCGATGGCCACGACAACTAACAAGAACAATGATGAAGTGGATGGGAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACTTATCAGGAACTATCATCTGCCCTTGAGAAGATGTTCCTAAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAGGGATCTTCTGCATGGTTCTGAGTATGTTCTCACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCATTGACACTTGCAAAAGGCTGAAAATTATGAAAGGTTCTGATGCCATTGGTTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG
>Glyma01g02350.3 sequence type=predicted peptide gene model=Glyma01g02350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMSPPAVVTEEEGRSNVSSTVASGSSQSLDRFSQNGAGLKERNYLGLSDCSSVDSSASTVPSLCDEKKENMNLKATELRLGLPGSQSPEREPDLFSLSPAKLDEKPLFPLLPTKDGICLSAQKTVVSGNKRGFADTMDGFSQGKFAGNTGMNAMLSPRPSGAQPSAMKEIPSKLQERPCSTKNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTTNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFLSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS* >Glyma01g02350.4 sequence type=predicted peptide gene model=Glyma01g02350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMSPPAVVTEEEGRSNVSSTVASGSSQSLDRFSQNGAGLKERNYLGLSDCSSVDSSASTVPSLCDEKKENMNLKATELRLGLPGSQSPEREPDLFSLSPAKLDEKPLFPLLPTKDGICLSAQKTVVSGNKRGFADTMDGFSQGKFAGNTGMNAMLSPRPSGAQPSAMKEIPSKLQERPCSTKNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTTNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFLSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS* >Glyma01g02350.5 sequence type=predicted peptide gene model=Glyma01g02350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMSPPAVVTEEEGRSNVSSTVASGSSQSLDRFSQNGAGLKERNYLGLSDCSSVDSSASTVPSLCDEKKENMNLKATELRLGLPGSQSPEREPDLFSLSPAKLDEKPLFPLLPTKDGICLSAQKTVVSGNKRGFADTMDGFSQGKFAGNTGMNAMLSPRPSGAQPSAMKEIPSKLQERPCSTKNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTTNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFLSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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