SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65685 | AT | Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein | chr5:26273252-26275864 REVERSE LENGTH=460 | SoyBase | E_val: 2.00E-165 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009011 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: starch synthase activity | SoyBase | N/A | ISS |
| PTHR12526 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PTHR12526:SF55 | Panther | SUCROSE-PHOSPHATE SYNTHASE | JGI | ISS | |
| PF08323 | PFAM | Starch synthase catalytic domain | JGI | ISS | |
| UniRef100_B2ZGM6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Starch synthase V n=1 Tax=Lotus japonicus RepID=B2ZGM6_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337E62 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337E62 related cluster n=1 Tax=unknown RepID=UPI0002337E62 | SoyBase | E_val: 0 | ISS |
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Glyma01g02321 not represented in the dataset |
Glyma01g02321 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g33665 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g019100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g02321.2 sequence type=transcript gene model=Glyma01g02321 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCTTAACATTAAGGGGGTGATCATTGATCAAATCAAATTCACAAGCACTCAGGCAGCACATGAGATGAGCGGACACGTGTTGCTTAGTTGGCATATTGTCTTGTCTTTATGGTTGTAGTTTCAACATGAAACAATGATTTGGATGAGAGACAGAGTAACATTATCATGGACACGGGTGTGACTGTGGTGCGATATCAGTCACTTGCAGCAGCTTCAGGACATAGCTTCCTTCTTCTGAACCTGAAGCGAATATGGGGACATTGTTTTTCTTCCATTCACCGATTCCTCACTTTTCACTCCCTTCCATGCCAAAACCCATTGCACTTCCTCCTCTTTCTTGTTTGAGGAATAATGGAGATGTCAATAGCTTACATGAACAGAAGTCAGAGGGTAACAAAAATGTGGACATGTCCCAGTCCATGTGTGATGATGACCAGAATGTGAAACAAGATAATATTTGGCAATTGTTCAAAGAAGCTCAACAGAACATACTATACTTGAACAAACAACGCCTTGGGGCCATTGAGAAACTTGACAAAACAAACAGAGAAAAACAGTCGCTTCTCAGTAAGATAAAGAAGTTGGAAGCAGAAAAACAGGCTGGTGCTGGTAAAGATAACCTATCAACTTGTTCAGAATTGCTGCTTCGGATAGATGCCATGGTTCTCAGCAGCATGATTAGTGCTGGAGAAGCATCTGAATTAAGAAGTTTGGTGATGAACCACAAAGTGAGTCTGGCTGATGTTTTTAATATCATCTCACACAAAAAAGATCCTGAACTTCTAGGAGAACTTCGTCGCTTTTCAGATGGACACAAAAAGAATGGTTTTCATATTGTTCACATTTGCACAGAAATGACACCATTGGTCCCTAGAGGATCAGTAGCTTCATATGTGACCGGCATATCTCGTGCACTTCAAAGAAAGGGCCACCTGGTGGAGGTTATATTGCCAAAGTATGCAAGTTTAAACCTAGATGAGGTGCAAGGGTTGCACGAAGTTAATGTAGAGGTTACCTCGTATTTTAATGGCCAATTACACGGAAATAGAATTTGGACTGGTGTTGTTTTTGGCATTGGAGTCACTTTGATAGAGCCAAAGTACTATTCATCATTTTTCAGCCATGAGATGATATATGGATACCCAGATGATTTTGAAAGGTTCTCCTATTTTTGTCGGGCATCATTGGACTATATTGTAAAATGTGGGAAGCAGCCTGATGTGTTGCATCTACATAATTGGGAGACAGCCATTGTTGGGCCCCTTTTCTGGGATACATTTGTTAAACAGGGACTTGAAGGAACCAGAATATTATTTACATGCCATGGCTTCAATTCACAGGGTATTGAGCAACCAGATAAGTTAGCCTTATGTGGGCTTGATCCTTTAAGACTTCATCGCCCTGATCGTTTACAAGACAACACTAACACACAACTTGTCAATATTTTAAAGGGTGGAGTTGTCTATTCGAATAGAGTTGTAATAATGTCATCTATCTATCCAAAGCACGTAATTGTTCATAATTTGAGTCATGAACTGGAGCCCACTTTAAATGTCCATAGGGACAAGTTGGTCATTGCTCCTTACGGATTAGACAAATCAACTTGGGATCCTTCAACTGACTATTTTCTTCCAGAAAATTTCAATGCTGAAAATATGAATGGAAAAGCTTTTTGCAAAGCTGCATTGCTACAGAAGCTGGGATTATCTGAACATTCTTCTACTATTCTTGTTGGATGCATTTTTTCAGAAGGACGAGACCTTGACAGAAAAAGGGTGAAGGAAGTTATCTTGAATGCTAAGCAGTATGATGTCCAGTTTATATTTATGGGGACCAGTGAAAGATTGATCATGAATCAGGCGCCTGAATCACTTCAGACGGAATTCAAGGATGATAATCTTAAATTTGTGCCTACTTATGATGAAGCTCTGTTGCATTTAGTCTTTGCTGGATCCGACATCATCTTGTGCCAATCTTTTCTTGATCCTACTGATGAAATCCCACTCATTGCTTTAAGGTATGGAGCAGCTCCAATAGCACTTGCCCCTGATGCTAGCTCAAACAGGTCGATACCTTTTGATAGGAGCTTCATAAACCAAGACCACGAGGCCACTAAGTACTCAGAGTTAATCAACTCTAGCTTCGTAAACATGTCTATTAGCCTTGCCATTGATGAAATTAGGACTAACCCTGCCATGTGGAAACGAAAAATAATGCAAGCAATGGCGCATGACTTATCATGGGATGGTGAATGCTACGATGTTCACGTTGAAGCTTACTCTGCTATAAAGAATATGTGAAATGGACCTGATATACATCCATCATCCATGTATATATATACATGTAAACATTTTTAGTTTAGTATTTTGAGATATGGATGAATAGTTATTAATTATATGCAAGTCAATAGCTCCACAAAAATTGGTGTCTTGTAAAATCTGTTGCAAAATGAATAATGATGCGGGGTGAGACAAGGAAGATCCGTCACAATTAGAATGATGAAGGGGTTGGCAGCCTAATATTAGGGGCAGAATAATGAAATTACGATACATTATCAAGAAGTTGAATGACTTAACAAATTATCAATGTTTGTCCCCTTTGCAATAAAATATATTTTATTTTACCGCAGTGTTGATTA
>Glyma01g02321.1 sequence type=CDS gene model=Glyma01g02321 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGACATTGTTTTTCTTCCATTCACCGATTCCTCACTTTTCACTCCCTTCCATGCCAAAACCCATTGCACTTCCTCCTCTTTCTTGTTTGAGGAATAATGGAGATGTCAATAGCTTACATGAACAGAAGTCAGAGGGTAACAAAAATGTGGACATGTCCCAGTCCATGTGTGATGATGACCAGAATGTGAAACAAGATAATATTTGGCAATTGTTCAAAGAAGCTCAACAGAACATACTATACTTGAACAAACAACGCCTTGGGGCCATTGAGAAACTTGACAAAACAAACAGAGAAAAACAGTCGCTTCTCAGTAAGATAAAGAAGTTGGAAGCAGAAAAACAGGCTGGTGCTGGTAAAGATAACCTATCAACTTGTTCAGAATTGCTGCTTCGGATAGATGCCATGGTTCTCAGCAGCATGATTAGTGCTGGAGAAGCATCTGAATTAAGAAGTTTGGTGATGAACCACAAAGTGAGTCTGGCTGATGTTTTTAATATCATCTCACACAAAAAAGATCCTGAACTTCTAGGAGAACTTCGTCGCTTTTCAGATGGACACAAAAAGAATGGTTTTCATATTGTTCACATTTGCACAGAAATGACACCATTGGTCCCTAGAGGATCAGTAGCTTCATATGTGACCGGCATATCTCGTGCACTTCAAAGAAAGGGCCACCTGGTGGAGGTTATATTGCCAAAGTATGCAAGTTTAAACCTAGATGAGGTGCAAGGGTTGCACGAAGTTAATGTAGAGGTTACCTCGTATTTTAATGGCCAATTACACGGAAATAGAATTTGGACTGGTGTTGTTTTTGGCATTGGAGTCACTTTGATAGAGCCAAAGTACTATTCATCATTTTTCAGCCATGAGATGATATATGGATACCCAGATGATTTTGAAAGGTTCTCCTATTTTTGTCGGGCATCATTGGACTATATTGTAAAATGTGGGAAGCAGCCTGATGTGTTGCATCTACATAATTGGGAGACAGCCATTGTTGGGCCCCTTTTCTGGGATACATTTGTTAAACAGGGACTTGAAGGAACCAGAATATTATTTACATGCCATGGCTTCAATTCACAGGGTATTGAGCAACCAGATAAGTTAGCCTTATGTGGGCTTGATCCTTTAAGACTTCATCGCCCTGATCGTTTACAAGACAACACTAACACACAACTTGTCAATATTTTAAAGGGTGGAGTTGTCTATTCGAATAGAGTTGTAATAATGTCATCTATCTATCCAAAGCACGTAATTGTTCATAATTTGAGTCATGAACTGGAGCCCACTTTAAATGTCCATAGGGACAAGTTGGTCATTGCTCCTTACGGATTAGACAAATCAACTTGGGATCCTTCAACTGACTATTTTCTTCCAGAAAATTTCAATGCTGAAAATATGAATGGAAAAGCTTTTTGCAAAGCTGCATTGCTACAGAAGCTGGGATTATCTGAACATTCTTCTACTATTCTTGTTGGATGCATTTTTTCAGAAGGACGAGACCTTGACAGAAAAAGGGTGAAGGAAGTTATCTTGAATGCTAAGCAGTATGATGTCCAGTTGCAGTTTATATTTATGGGGACCAGTGAAAGATTGATCATGAATCAGGCGCCTGAATCACTTCAGACGGAATTCAAGGATGATAATCTTAAATTTGTGCCTACTTATGATGAAGCTCTGTTGCATTTAGTCTTTGCTGGATCCGACATCATCTTGTGCCAATCTTTTCTTGATCCTACTGATGAAATCCCACTCATTGCTTTAAGGTATGGAGCAGCTCCAATAGCACTTGCCCCTGATGCTAGCTCAAACAGGTCGATACCTTTTGATAGGAGCTTCATAAACCAAGACCACGAGGCCACTAAGTACTCAGAGTTAATCAACTCTAGCTTCGTAAACATGTCTATTAGCCTTGCCATTGATGAAATTAGGACTAACCCTGCCATGTGGAAACGAAAAATAATGCAAGCAATGGCGCATGACTTATCATGGGATGGTGAATGCTACGATGTTCACGTTGAAGCTTACTCTGCTATAAAGAATATGTGA >Glyma01g02321.2 sequence type=CDS gene model=Glyma01g02321 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGACATTGTTTTTCTTCCATTCACCGATTCCTCACTTTTCACTCCCTTCCATGCCAAAACCCATTGCACTTCCTCCTCTTTCTTGTTTGAGGAATAATGGAGATGTCAATAGCTTACATGAACAGAAGTCAGAGGGTAACAAAAATGTGGACATGTCCCAGTCCATGTGTGATGATGACCAGAATGTGAAACAAGATAATATTTGGCAATTGTTCAAAGAAGCTCAACAGAACATACTATACTTGAACAAACAACGCCTTGGGGCCATTGAGAAACTTGACAAAACAAACAGAGAAAAACAGTCGCTTCTCAGTAAGATAAAGAAGTTGGAAGCAGAAAAACAGGCTGGTGCTGGTAAAGATAACCTATCAACTTGTTCAGAATTGCTGCTTCGGATAGATGCCATGGTTCTCAGCAGCATGATTAGTGCTGGAGAAGCATCTGAATTAAGAAGTTTGGTGATGAACCACAAAGTGAGTCTGGCTGATGTTTTTAATATCATCTCACACAAAAAAGATCCTGAACTTCTAGGAGAACTTCGTCGCTTTTCAGATGGACACAAAAAGAATGGTTTTCATATTGTTCACATTTGCACAGAAATGACACCATTGGTCCCTAGAGGATCAGTAGCTTCATATGTGACCGGCATATCTCGTGCACTTCAAAGAAAGGGCCACCTGGTGGAGGTTATATTGCCAAAGTATGCAAGTTTAAACCTAGATGAGGTGCAAGGGTTGCACGAAGTTAATGTAGAGGTTACCTCGTATTTTAATGGCCAATTACACGGAAATAGAATTTGGACTGGTGTTGTTTTTGGCATTGGAGTCACTTTGATAGAGCCAAAGTACTATTCATCATTTTTCAGCCATGAGATGATATATGGATACCCAGATGATTTTGAAAGGTTCTCCTATTTTTGTCGGGCATCATTGGACTATATTGTAAAATGTGGGAAGCAGCCTGATGTGTTGCATCTACATAATTGGGAGACAGCCATTGTTGGGCCCCTTTTCTGGGATACATTTGTTAAACAGGGACTTGAAGGAACCAGAATATTATTTACATGCCATGGCTTCAATTCACAGGGTATTGAGCAACCAGATAAGTTAGCCTTATGTGGGCTTGATCCTTTAAGACTTCATCGCCCTGATCGTTTACAAGACAACACTAACACACAACTTGTCAATATTTTAAAGGGTGGAGTTGTCTATTCGAATAGAGTTGTAATAATGTCATCTATCTATCCAAAGCACGTAATTGTTCATAATTTGAGTCATGAACTGGAGCCCACTTTAAATGTCCATAGGGACAAGTTGGTCATTGCTCCTTACGGATTAGACAAATCAACTTGGGATCCTTCAACTGACTATTTTCTTCCAGAAAATTTCAATGCTGAAAATATGAATGGAAAAGCTTTTTGCAAAGCTGCATTGCTACAGAAGCTGGGATTATCTGAACATTCTTCTACTATTCTTGTTGGATGCATTTTTTCAGAAGGACGAGACCTTGACAGAAAAAGGGTGAAGGAAGTTATCTTGAATGCTAAGCAGTATGATGTCCAGTTTATATTTATGGGGACCAGTGAAAGATTGATCATGAATCAGGCGCCTGAATCACTTCAGACGGAATTCAAGGATGATAATCTTAAATTTGTGCCTACTTATGATGAAGCTCTGTTGCATTTAGTCTTTGCTGGATCCGACATCATCTTGTGCCAATCTTTTCTTGATCCTACTGATGAAATCCCACTCATTGCTTTAAGGTATGGAGCAGCTCCAATAGCACTTGCCCCTGATGCTAGCTCAAACAGGTCGATACCTTTTGATAGGAGCTTCATAAACCAAGACCACGAGGCCACTAAGTACTCAGAGTTAATCAACTCTAGCTTCGTAAACATGTCTATTAGCCTTGCCATTGATGAAATTAGGACTAACCCTGCCATGTGGAAACGAAAAATAATGCAAGCAATGGCGCATGACTTATCATGGGATGGTGAATGCTACGATGTTCACGTTGAAGCTTACTCTGCTATAAAGAATATGTGA
>Glyma01g02321.1 sequence type=predicted peptide gene model=Glyma01g02321 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTLFFFHSPIPHFSLPSMPKPIALPPLSCLRNNGDVNSLHEQKSEGNKNVDMSQSMCDDDQNVKQDNIWQLFKEAQQNILYLNKQRLGAIEKLDKTNREKQSLLSKIKKLEAEKQAGAGKDNLSTCSELLLRIDAMVLSSMISAGEASELRSLVMNHKVSLADVFNIISHKKDPELLGELRRFSDGHKKNGFHIVHICTEMTPLVPRGSVASYVTGISRALQRKGHLVEVILPKYASLNLDEVQGLHEVNVEVTSYFNGQLHGNRIWTGVVFGIGVTLIEPKYYSSFFSHEMIYGYPDDFERFSYFCRASLDYIVKCGKQPDVLHLHNWETAIVGPLFWDTFVKQGLEGTRILFTCHGFNSQGIEQPDKLALCGLDPLRLHRPDRLQDNTNTQLVNILKGGVVYSNRVVIMSSIYPKHVIVHNLSHELEPTLNVHRDKLVIAPYGLDKSTWDPSTDYFLPENFNAENMNGKAFCKAALLQKLGLSEHSSTILVGCIFSEGRDLDRKRVKEVILNAKQYDVQLQFIFMGTSERLIMNQAPESLQTEFKDDNLKFVPTYDEALLHLVFAGSDIILCQSFLDPTDEIPLIALRYGAAPIALAPDASSNRSIPFDRSFINQDHEATKYSELINSSFVNMSISLAIDEIRTNPAMWKRKIMQAMAHDLSWDGECYDVHVEAYSAIKNM* >Glyma01g02321.2 sequence type=predicted peptide gene model=Glyma01g02321 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTLFFFHSPIPHFSLPSMPKPIALPPLSCLRNNGDVNSLHEQKSEGNKNVDMSQSMCDDDQNVKQDNIWQLFKEAQQNILYLNKQRLGAIEKLDKTNREKQSLLSKIKKLEAEKQAGAGKDNLSTCSELLLRIDAMVLSSMISAGEASELRSLVMNHKVSLADVFNIISHKKDPELLGELRRFSDGHKKNGFHIVHICTEMTPLVPRGSVASYVTGISRALQRKGHLVEVILPKYASLNLDEVQGLHEVNVEVTSYFNGQLHGNRIWTGVVFGIGVTLIEPKYYSSFFSHEMIYGYPDDFERFSYFCRASLDYIVKCGKQPDVLHLHNWETAIVGPLFWDTFVKQGLEGTRILFTCHGFNSQGIEQPDKLALCGLDPLRLHRPDRLQDNTNTQLVNILKGGVVYSNRVVIMSSIYPKHVIVHNLSHELEPTLNVHRDKLVIAPYGLDKSTWDPSTDYFLPENFNAENMNGKAFCKAALLQKLGLSEHSSTILVGCIFSEGRDLDRKRVKEVILNAKQYDVQFIFMGTSERLIMNQAPESLQTEFKDDNLKFVPTYDEALLHLVFAGSDIILCQSFLDPTDEIPLIALRYGAAPIALAPDASSNRSIPFDRSFINQDHEATKYSELINSSFVNMSISLAIDEIRTNPAMWKRKIMQAMAHDLSWDGECYDVHVEAYSAIKNM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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