SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G32640 | AT | Annotation by Michelle Graham. TAIR10: Basic helix-loop-helix (bHLH) DNA-binding family protein | chr1:11799042-11800913 REVERSE LENGTH=623 | SoyBase | E_val: 0 | ISS |
| GO:0006568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan metabolic process | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to desiccation | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009694 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009759 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indole glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043619 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter in response to oxidative stress | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0051090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:2000068 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response to insect | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG4029 | KOG | Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 | JGI | ISS | |
| PTHR11514 | Panther | MYC | JGI | ISS | |
| PTHR11514:SF7 | Panther | B-MYC PROTO-ONCOGENE | JGI | ISS | |
| PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | ISS | |
| UniRef100_Q41102 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phaseolin G-box binding protein PG2 (Fragment) n=1 Tax=Phaseolus vulgaris RepID=Q41102_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336DE0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336DE0 related cluster n=1 Tax=unknown RepID=UPI0002336DE0 | SoyBase | E_val: 0 | ISS |
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Glyma01g02251 not represented in the dataset |
Glyma01g02251 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g33730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g018400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g02251.1 sequence type=CDS gene model=Glyma01g02251 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGCCTTCATGTCGTCCTCCGATCTCTCCTCAATCTGGCCCTCGCCGGCGCCGCCGCAATCCACGGCGGTCTTCAATCAGGACACCCTCCAGCATCGCCTGCAGGCCTTGATCGAAGGCGCCCGAGAGACCTGGACCTACGCCATCTTCTGGCAGTCCTCTTATGACTATTCTGGCTCCACTCTCCTCGGCTGGGGCGACGGTTACTACAAAGGCGACGACGACAAAGCCAAAGCCAAGGCCAAGGCCAAGGTCAAGGTCACTTCCGCCGCCGAGCAGGACCACCGCAAAAAAGTTCTCCGCGAACTCAACTCCCTGATCTCCGGCTCCTCCTCCTCCTCCGCCGCCTCCGACGACGTCGACGAGGAGGTCACCGACACCGAGTGGTTCTTCCTGGTCTCCATGACGCAGTCCTTCGTCAACGGCGGAGGACTTCCCGGACAGGCCTTCTTCAACTCCGCTCCGGTGTGGGTCACCGGGGGCGACCGTCTCTCTGCCTCGGCCTGCGAGAGGGCGAGGCAGGGACACGTGTTCGGGCTGCAAACCCTGGTTTGCATACCGTCCGCGAACGGCGTCGTTGAGCTGGGGTCCACCGAGTTAATTTTCCAGAACCCGGATCTGATGAACAAGGTGAAGGTTCTGTTCAATTTCAGCAACAACAACTTCGACATGGGTTCTTCTTGGCCCGCCACCAGCGCCGATCAGGGCGAAAACGACCCTTCCTCGCTCTGGCTCAGCGATCCCGAAGTTAGGGATTCCATTAACACTGTTGCTGCTACCCCTTCGGTTTCGGTTCCTGCACAGACTCAGGGGATTCGATTTCCAAGACCATGCAGTTGGAAAGTTCTATTCAAACCCCTGGTTCCAAACCAGAGCGTCTTCTCCAGAGAATTGAACTTTTCTGAGTATGGTTTCGACCCAAAGACTGGGAACAATCAGAATCACCATTCTCTGAAGCCGGAATCCGGCGAGATTCTCAGCTTCGGCGAGAGCAAGAGAACCTCCTACGGCGGCGTCAATGGGAATTCCAATTCCAATTCCCATTTTTTCTCCGGTCAGTCGCCGTTTGTTGCTGCTGCGGATGAGAACACCAACAAAAATAACATCAACAACAATGGGAAGACAAAGTCACCGAATTCGCGCGGTAGCAACGACGACGGAATGCTTTCCTTCACCTCCGGCGTGATTCTTCCGGCCTCGAATTTGAAGTCCGGTGGCGGCGGCGATTCCGACCACTCGGATCTGGAGGCTTCGGTGGTGAAGGACCCGGTGGTGGAGCCGGAGAAGCGGCCGCGGAAGAGAGGGCGTAAGCCGGCGAACGGAAGAGAGGAACCATTAAACCATGTTGAAGCAGAGAGACAGAGGAGGGAGAAGCTGAACCAGAGGTTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCAAAGATGGACAAAGCGTCACTCCTGGGCGACGCCATATCTTACATCACGGAGCTGAAGTCCAAGCTTCAGACCCTCGAATCAGATAAAGATGGAATGCAGAAGCAGCTGGAAGGTGTGAAGAAGGAGCTCGAGAAAACAACCGAGAACGTTTCTTCTAATCACGCGGGTAATAGTAGTAGTTGTAACAACAACAACAAGTTGTCGAATCAGAAGTTAATTGACGTGTTGGAGATGGACGTGAAGATACTTGGGTGGGACGCGATGATAAGGATCCATTGCAGCAAGAAGAACCACCCCGGGGCGAGGTTGTTGACGGCATTGATGGAGTTGGACTTGGACGTGCACCACGCCAACGTAAATTTGGTCAACGATATGACCATGCTACAAGCAACGGTGAAGATGGGAAGTAGGTTTTACACGCAGGAGCAGCTTCGTGCGGCTCTGGCGGCTAAGGTTGGGGATGCACGATGA
>Glyma01g02251.1 sequence type=predicted peptide gene model=Glyma01g02251 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAFMSSSDLSSIWPSPAPPQSTAVFNQDTLQHRLQALIEGARETWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKVKVTSAAEQDHRKKVLRELNSLISGSSSSSAASDDVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAFFNSAPVWVTGGDRLSASACERARQGHVFGLQTLVCIPSANGVVELGSTELIFQNPDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSSLWLSDPEVRDSINTVAATPSVSVPAQTQGIRFPRPCSWKVLFKPLVPNQSVFSRELNFSEYGFDPKTGNNQNHHSLKPESGEILSFGESKRTSYGGVNGNSNSNSHFFSGQSPFVAAADENTNKNNINNNGKTKSPNSRGSNDDGMLSFTSGVILPASNLKSGGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGMQKQLEGVKKELEKTTENVSSNHAGNSSSCNNNNKLSNQKLIDVLEMDVKILGWDAMIRIHCSKKNHPGARLLTALMELDLDVHHANVNLVNDMTMLQATVKMGSRFYTQEQLRAALAAKVGDAR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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