SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17920 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr4:9963221-9964090 REVERSE LENGTH=289 | SoyBase | E_val: 8.00E-60 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR22765 | Panther | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | JGI | ISS | |
| PTHR22765:SF21 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G7KFV0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger-like protein n=1 Tax=Medicago truncatula RepID=G7KFV0_MEDTR | SoyBase | E_val: 2.00E-80 | ISS |
| UniRef100_I1J4U5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1J4U5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g02130 not represented in the dataset |
Glyma01g02130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g017200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g02130.1 sequence type=CDS gene model=Glyma01g02130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAACGACCAAGTACGATGTCTTCGCCAGACTCAAAGCAAACTACTCCGAAACCGTACTTCCGCCACCACCGCCACCGCCACAAATCACCCCGTCGACGCTAATATCCTTCACCGTGGTGGTGGCGGTGGTCTGCTTCGTGGGTTTCAGTATTCTCTGCTTCTTCAGGTGCTGTTTCGTGAACATAAGCTCCACCACCCTCGTTCATCTTTCTCCCAATGCTTCTCCCTTCAGAGGCCTCGACCCTTCACAGCTGCAAGCGTTCCCCACGTTCCTCTACGCCACCGTGAAGGATCTCCGCAAGGAGAAGAATCAGTATTCATTAGAATGCGCCATTTGCTTGTTGGAGTTCGACCATGACAGCATGCTGAGACTCTTAACCGTTTGCTACCATGTTTTCCACCAAGAGTGCATCGATTTGTGGCTAAGGTCACATAAGACTTGCCCCGTTTGTCGCACGGATCTTGATCAGTCACCATTGATCACAAACAAATCTCCAGAACACCAAAACGAGGACAATATTGTAGAACAAGAGATCAGCACAGATCATCATCACGTGTGCATTGATGTAAAAGAAGGTGATGATAGTGAGGGCATGCAGGAACAGAAGATTGAATTTGCACGTTCACACTCAACGGGACATTCCATAGTTATGGTTAGAGGAGAAGGGAGACATGCTGATAAATATACGTTGAGATTGCCGGAGAATGTGGCGTTCAAAATTGTAAAAGGAGGGCACAACTACTCCAAGAGTTGTTCTAGTTCCAAAGATATGGCAAGGCTTGCTGCACCTTGCAGGAATTGTGGTTATGTTCAAACTGTATTTCAAAGTTCCTCATCCCGTAGTGATATAAAAAATATTTAA
>Glyma01g02130.1 sequence type=predicted peptide gene model=Glyma01g02130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTTKYDVFARLKANYSETVLPPPPPPPQITPSTLISFTVVVAVVCFVGFSILCFFRCCFVNISSTTLVHLSPNASPFRGLDPSQLQAFPTFLYATVKDLRKEKNQYSLECAICLLEFDHDSMLRLLTVCYHVFHQECIDLWLRSHKTCPVCRTDLDQSPLITNKSPEHQNEDNIVEQEISTDHHHVCIDVKEGDDSEGMQEQKIEFARSHSTGHSIVMVRGEGRHADKYTLRLPENVAFKIVKGGHNYSKSCSSSKDMARLAAPCRNCGYVQTVFQSSSSRSDIKNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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