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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25960 | AT | Annotation by Michelle Graham. TAIR10: P-glycoprotein 2 | chr4:13177438-13183425 FORWARD LENGTH=1273 | SoyBase | E_val: 0 | ISS |
| GO:0006200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP catabolic process | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0010315 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin efflux | SoyBase | N/A | ISS |
| GO:0010540 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basipetal auxin transport | SoyBase | N/A | ISS |
| GO:0010541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acropetal auxin transport | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
| KOG0055 | KOG | Multidrug/pheromone exporter, ABC superfamily | JGI | ISS | |
| PTHR24221 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00005 | PFAM | ABC transporter | JGI | ISS | |
| PF00664 | PFAM | ABC transporter transmembrane region | JGI | ISS | |
| UniRef100_G7KDP1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter B family member n=1 Tax=Medicago truncatula RepID=G7KDP1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J4T8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=5 Tax=Glycine RepID=I1J4T8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g02060 not represented in the dataset |
Glyma01g02060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g33880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g016500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g02060.1 sequence type=CDS gene model=Glyma01g02060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGACCGGGGTACCCTCTCCGGTGACTCGGCCGTGGATGATGCTAAGAGCAACAAAAAGGAACACAAAGTTTCTCTGCTGAAACTCTTCTCTTTTGCTGACTTCTATGACTATGTTTTAATGGGTGTTGGGTCTGTTGGGGCAATTGTACATGGTGCTTCTGTTCCCGTTTTCTTTATCTTCTTTGGAAAGTTGATCAATGTCATAGGCTTGGCCTATCTTTTCCCCAAGGAAGCCTCTCACAAAGTTGCCAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGAATGGCTTATTTGAAATCAATGTTGAATCAAGATATTAGTCTATTTGATACCGAGGCTTCAACAGGAGAGGTTATTTCTTCCATTACTAGTGACATTATCATTGTTCAAGATGCACTATCCGAGAAGGTGGGGAACTTCATGCACTACATAAGCCGATTTGTAGCGGGCTTTGTTATTGGGTTTGTTAGAGTGTGGCAGATCAGTTTAGTGACACTTTCAATTGTACCCTTGATTGCTCTTGCTGGAGGTCTTTATGCATACGTCACAATTGGGCTCATTGCAAAAGTTCGAAAAGCCTACGTGAGGGCTGGTGAAATCGCTGAAGAGGTGATTGGCAATGTTAGAACGGTTCAAGCATTTGCGGGAGAAGAAAGGGCAGTAAGATCATATAAAGCTGCACTCATGAAAACTTATGTAAACGGTAGAAAAGCAGGTTTGGCAAAGGGCCTGGGCTTGGGCTCAATGCACTGTGTCCTTTTTCTATCATGGTCTTTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAATATTGCCAATGGAGGCGAGTCTTTCACTACCATGCTCAACGTTGTGATCGCTGGCCTGTCACTGGGGCAGGCAGCACCAGATATATCTGCATTCATTCGAGCAAAGGCAGCAGCTTATCCAATTTTTGAGATGATAGAGAGGGACACAGTGAGCAAAAGTAGCTCAAAAACCGGTCGCAAGTTAGGCAAATTGGAGGGTCATATCCAGTTCAAGAACATCTGTTTCAGTTACCCGTCTCGTCCAGATGTAGCAATATTCAACAACCTGTGTCTTGACATTCCTTCAGGGAAAATTGTAGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTCATATCATTGATTGAGCGCTTTTATGAACCACTTTCTGGTCAGATACTATTAGACAGGAATGATATCAGGGAACTTGATCTCAAATGGCTTAGGCAGCAAATTGGGCTGGTTAATCAAGAACCTGCGCTTTTTGCTACAAGCATCAAGGAGAACATACTTTATGGAAAAGATGATGCCACTCTTGAAGAACTAAAACGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATCAACAATCTTCCTGATAGACTAGAAACTCAGGTTGGTGAGAGAGGTATACAACTTTCAGGAGGGCAGAAGCAAAGGATTGCAATATCTCGTGCAATCGTGAAGAATCCATCAATCCTTTTGTTGGACGAAGCGACTAGTGCTCTGGATGCTGAGTCTGAGAAGAGTGTGCAGGAGGCTCTTGATCGTGTGATGGTTGGGAGAACAACTGTTGTAGTGGCACACAGACTCTCTACCATTAGGAATGCAGATATGATTGCTGTTGTGCAGGGAGGGAAGATTGTGGAAACTGGTAACCATGAAGAGCTCATGGCCAACCCAACTAGTGTTTATGCATCTCTTGTTCAACTCCAGGAGGCTGCTTCTCTACATCGCCTCCCATCAATTGGTCCTAGCATGGGACGCCAACCAAGCATAACCTACTCAAGAGAATTATCCCGTACAACAACAAGCCTTGGTGGTAGTTTTCGATCAGATAAAGAATCTATTGGCCGGGTTTGTGCTGAAGAAACAGAAAATGCAGGCAAGAAAAGGCATGTTTCAGCAGCAAGGCTGTACTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTGCTGGGACCTTATGTGCATTTATTGCTGGAGCACAGATGCCACTTTTTGCACTTGGAATTTCTCACGCACTTGTATCATACTATATGGACTGGGAGACAACATGTCACGAAGTTAAAAAAATTGCATTCCTCTTCTGTGGAGCAGCAGTTATAACTGTCACTGTCCATGCCATTGAACATCTTTCTTTTGGAATCATGGGAGAGCGACTAACCCTTCGTGTGAGAGAAATGATGTTTTCTGCTATCTTGAAGAATGAAATTGGCTGGTTTGACGATACAAACAACACAAGTTCCATGCTTTCATCGCAGTTAGAGACTGATGCAACATTATTACGAACTATAGTTGTTGATCGTTCAACAATTCTGTTACAGAATATTGGTTTGGTTGTTGCTTCATTTATTGTTGCCTTCATCTTGAACTGGAGAATAACACTGGTTGTCATAGCCACATATCCTTTGATCATTAGTGGTCATATCAGTGAGAAACTTTTTATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTGGCTGGGGAGGCTGTGAGCAATATACGCACTGTTGCCGCATTTTGTTCTGAAGAAAAGGTCCTTGACCTTTATGCTAATGAGCTCGTTGATCCCTCCAAACGCTCACTTCAACGAGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTTTTAATGGAAAAGGAGCTTGCTAGCTTTAAATCAATTATGAAGGCATTTTTTGTTTTGATAGTAACAGCACTGGCCATGGGGGAGACATTGGCCCTGGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAATATCATGTGAGGTTGGAGAAGAGTTGAAGACAGTGGATGGAACAATCGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTAATTATTTTCAAGGATTTCAATCTAAGAGTTCCTGCAGGCAAGAGTGTTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCGGTGATCTCCCTTATACTCAGATTTTATGATCCAACATCCGGAAGGGTGTTAATTGATGGAAAAGACATCACGAGACTTAATCTGAAATCTCTTAGGAGACACATTGGTCTTGTACAACAAGAACCAGCTCTTTTTGCAACATCAATTTATGAAAACATACTTTATGGAAAAGAAGGTGCCTCTGATTCAGAAGTGATTGAAGCAGCTAAGCTTGCCAATGCTCATAACTTCATCAGTGGTCTTCCTGAGGGTTACTCCACCAAAGTAGGTGAAAGAGGAGTGCAACTATCTGGTGGCCAAAGACAAAGGGTAGCCATTGCAAGAGCAGTTCTAAAGAACCCTGAAATCTTGCTTCTGGATGAAGCCACTAGTGCACTTGATGTTGAGTCAGAGCGTATTGTGCAACAAGCATTGGACAGATTAATGCAGAACAGAACTACAGTTATGGTGGCACATAGGCTATCCACTATAAGAAATGCAGACCAAATCTCAGTTTTGCAAGATGGAAAGATAATTGACCAAGGGACTCATTCAAGTCTTATAGAGAATAAAAATGGAGCATACTATAAATTAGTCAACCTTCAACAACAGCAGCATCAATTATAG
>Glyma01g02060.1 sequence type=predicted peptide gene model=Glyma01g02060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDRGTLSGDSAVDDAKSNKKEHKVSLLKLFSFADFYDYVLMGVGSVGAIVHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISSITSDIIIVQDALSEKVGNFMHYISRFVAGFVIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGESFTTMLNVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKSSSKTGRKLGKLEGHIQFKNICFSYPSRPDVAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADMIAVVQGGKIVETGNHEELMANPTSVYASLVQLQEAASLHRLPSIGPSMGRQPSITYSRELSRTTTSLGGSFRSDKESIGRVCAEETENAGKKRHVSAARLYSMVGPDWFYGVAGTLCAFIAGAQMPLFALGISHALVSYYMDWETTCHEVKKIAFLFCGAAVITVTVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSQLETDATLLRTIVVDRSTILLQNIGLVVASFIVAFILNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSLQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKAFFVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGISCEVGEELKTVDGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKSVALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKDITRLNLKSLRRHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIDQGTHSSLIENKNGAYYKLVNLQQQQHQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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