SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G32310 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11653619-11654538 FORWARD LENGTH=100 | SoyBase | E_val: 4.00E-30 | ISS |
| GO:0007276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gamete generation | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0032875 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045732 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of protein catabolic process | SoyBase | N/A | ISS |
| GO:0046621 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of organ growth | SoyBase | N/A | ISS |
| GO:0051302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell division | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0010997 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: anaphase-promoting complex binding | SoyBase | N/A | ISS |
| UniRef100_I1J4T1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4T1_SOYBN | SoyBase | E_val: 8.00E-76 | ISS |
| UniRef100_Q9LQM9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F5D14.6 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LQM9_ARATH | SoyBase | E_val: 3.00E-20 | ISS |
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Glyma01g01970 not represented in the dataset |
Glyma01g01970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g33940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g015700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g01970.2 sequence type=transcript gene model=Glyma01g01970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTTTTCTTAGAGCATTTTAAAAATATCCTTTTTTTTTCTTTTGCGTGGGATGAACTGGTGAGTGCTGAATCTGCTGATTCAAATTTCAAAGTTGGCACGATCACCAAATTAAACAAAAACCTGAGAAGTTCGTGTCATGTTACGCAGCACACTTAAAGCTTGATTCTACAGAGTTCCGAATCCCGACGTAAGCTGAAAAACACACGAATTGGTTCTTATTCATATTCAGAAAAACCAATTTTTGAGGAACGATGAATAGTTCATCGCCGGCCCACTCTTCACTATCGACGACGGCGGTTGTAGGCGGCGGTGGTGGTGGCGGCGGCAGCAGCAACGCCACTGTTTCCATTGACGATTTTCATCTCCCGTGTGATCCCATCTCGTCGCAAGAGCGTAAAGACGAGGCCATGCTAGTTTTAAAATCAGATCTCATGGCTGCACTCAACAAGGAGGTTAAATCATTGGTTGAAGATAACTGGAAGTTTGAAGGGCCACGTTCGCGGATCCACCTCGTATCACATCGAGGTGGTCATCTCTATAGGCCCACAGAAATTTCAAAGAATTGGAATTTGACTCCACCAAAATAGTTTGCACACTCACCTCGTAGCACTGTGCTTCTATTGTGACATGATTATGGTTGTTATCTGCAGATAAGAACTGTTATGCCTATTTTTTTTTTTCCCATGGTAGAAAACATAGCTGTTACTCTACATCTTCTGGTGACATGTAGGTCTGAAAGGGCATGAAGATTGCAAATGAAGGTTCTTTCCATGCAAGATTGTTAGTCACATTTTCTGTTAGTCTTTCTAGTCTGGATTGAGAAGCTGGTGTTTTTTAATATTTATGTGATATTATTGCTCTAATTTTGAGGGATCAATGATTAATTGCAATTGATTGTTACAAAACTGAAGGTATTTTAATGTTCAAGTTGGGGATATTGGATTCAGAAAGAAAAGATTAATATTACAAGTGGCTCACGAAGTCACTCGAGTTATTGGTGGGTGAACTTGAGTTACTATTTGCTGATAAGATCTCTTTTTTCCTTTTTTTGATTGAAA >Glyma01g01970.3 sequence type=transcript gene model=Glyma01g01970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTTTTCTTAGAGCATTTTAAAAATATCCTTTTTTTTTCTTTTGCGTGGGATGAACTGGTGAGTGCTGAATCTGCTGATTCAAATTTCAAAGTTGGCACGATCACCAAATTAAACAAAAACCTGAGAAGTTCGTGTCATGTTACGCAGCACACTTAAAGCTTGATTCTACAGAGTTCCGAATCCCGACGTAAGCTGAAAAACACACGAATTGGTTCTTATTCATATTCAGAAAAACCAATTTTTGAGGAACGATGAATAGTTCATCGCCGGCCCACTCTTCACTATCGACGACGGCGGTTGTAGGCGGCGGTGGTGGTGGCGGCGGCAGCAGCAACGCCACTGTTTCCATTGACGATTTTCATCTCCCGTGTGATCCCATCTCGTCGCAAGAGCGTAAAGACGAGGCCATGCTAGTTTTAAAATCAGATCTCATGGCTGCACTCAACAAGGAGGTTAAATCATTGGTTGAAGATAACTGGAAGTTTGAAGGGCCACGTTCGCGGATCCACCTCGTATCACATCGAGGTGGTCATCTCTATAGGCCCACAGAAATTTCAAAGAATTGGAATTTGACTCCACCAAAATAGTTTGCACACTCACCTCGTAGCACTGTGCTTCTATTGTGACATGATTATGGTCTGAAAGGGCATGAAGATTGCAAATGAAGGTTCTTTCCATGCAAGATTGTTAGTCACATTTTCTGTTAGTCTTTCTAGTCTGGATTGAGAAGCTGGTGTTTTTTAATATTTATGTGATATTATTGCTCTAATTTTGAGGGATCAATGATTAATTGCAATTGATTGTTACAAAACTGAAGGTATTTTAATGTTCAAGTTGGGGATATTGGATTCAGAAAGAAAAGATTAATATTACAAGTGGCTCACGAAGTCACTCGAGTTATTGGTGGGTGAACTTGAGTTACTATTTGCTGATAAGATCTCTTTTTTCCTTTTTTTGATTGAAA
>Glyma01g01970.1 sequence type=CDS gene model=Glyma01g01970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATAGTTCATCGCCGGCCCACTCTTCACTATCGACGACGGCGGTTGTAGGCGGCGGTGGTGGTGGCGGCGGCAGCAGCAACGCCACTGTTTCCATTGACGATTTTCATCTCCCGTGTGATCCCATCTCGTCGCAAGAGCGTAAAGACGAGGCCATGCTAGTTTTAAAATCAGATCTCATGGCTGCACTCAACAAGGAGGTTAAATCATTGGTTGAAGATAACTGGAAGTTTGAAGGGCCACGTTCGCGGATCCACCTCGTATCACATCGAGGTGGTGGTCATCTCTATAGGCCCACAGAAATTTCAAAGAATTGGAATTTGACTCCACCAAAATAG >Glyma01g01970.2 sequence type=CDS gene model=Glyma01g01970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATAGTTCATCGCCGGCCCACTCTTCACTATCGACGACGGCGGTTGTAGGCGGCGGTGGTGGTGGCGGCGGCAGCAGCAACGCCACTGTTTCCATTGACGATTTTCATCTCCCGTGTGATCCCATCTCGTCGCAAGAGCGTAAAGACGAGGCCATGCTAGTTTTAAAATCAGATCTCATGGCTGCACTCAACAAGGAGGTTAAATCATTGGTTGAAGATAACTGGAAGTTTGAAGGGCCACGTTCGCGGATCCACCTCGTATCACATCGAGGTGGTCATCTCTATAGGCCCACAGAAATTTCAAAGAATTGGAATTTGACTCCACCAAAATAG >Glyma01g01970.3 sequence type=CDS gene model=Glyma01g01970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATAGTTCATCGCCGGCCCACTCTTCACTATCGACGACGGCGGTTGTAGGCGGCGGTGGTGGTGGCGGCGGCAGCAGCAACGCCACTGTTTCCATTGACGATTTTCATCTCCCGTGTGATCCCATCTCGTCGCAAGAGCGTAAAGACGAGGCCATGCTAGTTTTAAAATCAGATCTCATGGCTGCACTCAACAAGGAGGTTAAATCATTGGTTGAAGATAACTGGAAGTTTGAAGGGCCACGTTCGCGGATCCACCTCGTATCACATCGAGGTGGTCATCTCTATAGGCCCACAGAAATTTCAAAGAATTGGAATTTGACTCCACCAAAATAG
>Glyma01g01970.1 sequence type=predicted peptide gene model=Glyma01g01970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSSSPAHSSLSTTAVVGGGGGGGGSSNATVSIDDFHLPCDPISSQERKDEAMLVLKSDLMAALNKEVKSLVEDNWKFEGPRSRIHLVSHRGGGHLYRPTEISKNWNLTPPK* >Glyma01g01970.2 sequence type=predicted peptide gene model=Glyma01g01970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSSSPAHSSLSTTAVVGGGGGGGGSSNATVSIDDFHLPCDPISSQERKDEAMLVLKSDLMAALNKEVKSLVEDNWKFEGPRSRIHLVSHRGGHLYRPTEISKNWNLTPPK* >Glyma01g01970.3 sequence type=predicted peptide gene model=Glyma01g01970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSSSPAHSSLSTTAVVGGGGGGGGSSNATVSIDDFHLPCDPISSQERKDEAMLVLKSDLMAALNKEVKSLVEDNWKFEGPRSRIHLVSHRGGHLYRPTEISKNWNLTPPK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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