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Report for Sequence Feature Glyma01g01960

Feature Type:gene_model
Chromosome:Gm01
Start:1526004
stop:1531395
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g01960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G46860AT Annotation by Michelle Graham. TAIR10: Syntaxin/t-SNARE family protein | chr5:19012342-19013795 REVERSE LENGTH=268 SoyBaseE_val: 4.00E-144ISS
GO:0000902GO-bp Annotation by Michelle Graham. GO Biological Process: cell morphogenesis SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0009556GO-bp Annotation by Michelle Graham. GO Biological Process: microsporogenesis SoyBaseN/AISS
GO:0009660GO-bp Annotation by Michelle Graham. GO Biological Process: amyloplast organization SoyBaseN/AISS
GO:0009959GO-bp Annotation by Michelle Graham. GO Biological Process: negative gravitropism SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0016197GO-bp Annotation by Michelle Graham. GO Biological Process: endosomal transport SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0052543GO-bp Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall SoyBaseN/AISS
GO:0000325GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole SoyBaseN/AISS
GO:0005770GO-cc Annotation by Michelle Graham. GO Cellular Compartment: late endosome SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009705GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane SoyBaseN/AISS
GO:0030140GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network transport vesicle SoyBaseN/AISS
GO:0005484GO-mf Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG0811 KOG SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 JGI ISS
PTHR19957Panther SYNTAXIN JGI ISS
PTHR19957:SF11Panther SYNTAXIN-RELATED JGI ISS
PF00804PFAM Syntaxin JGI ISS
PF05739PFAM SNARE domain JGI ISS
UniRef100_I1J4T0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4T0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8LJR4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin n=1 Tax=Glycine max RepID=Q8LJR4_SOYBN SoyBaseE_val: 3.00E-166ISS

Expression Patterns of Glyma01g01960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g01960 not represented in the dataset
Glyma01g01960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g01960
ParalogEvidenceComments
Glyma09g33950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g01960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g015600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g01960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g01960
>Glyma01g01960.1   sequence type=CDS   gene model=Glyma01g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTTCAGGACATCGAGGCCGGCCGTTCCTTCGCTTCCCGGCGAAATCTAATCAACGGCAAACAAGACCCCACGCAGGCGGTGGCTTCCGGCATCTTTCAGATCAACACCGCCGTCTCCACGTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATGCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTTCAGCGGAGAGGGAAACTGCTTACACTCCTTTTGTTCCGCAAGCACTTCTTCCATCCAGCTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAGACTCCAGAACAGCGTGCACTTCTTGTGGAATCCAGAAGACAGGAGGTATTATTCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGTCGCAGATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAGCAATGATTGATGATATCGGGTCCAATATTGAGCATTCCCATGAAGCAACTGCGCAAGCAAAATCTCAACTTGCCAAAGCTTCAAAGACGCAAAGATCAAATTCATCTTTGACATGCTTGCTTCTGGTGATATTCGGGATCGTGCTTCTAATCGTCATCATTGTTCTTGCTGCTTAG
Predicted protein sequences of Glyma01g01960
>Glyma01g01960.1   sequence type=predicted peptide   gene model=Glyma01g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFQDIEAGRSFASRRNLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSAKLKQASEIDHNVEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQALLPSSYTASEVDIGSDKTPEQRALLVESRRQEVLFLDNEISFNEAIIEEREQGIQEIQSQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHEATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA*






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