SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G35500 | AT | Annotation by Michelle Graham. TAIR10: shikimate kinase like 2 | chr2:14914038-14915909 FORWARD LENGTH=387 | SoyBase | E_val: 1.00E-149 | ISS |
| GO:0000096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0006546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycine catabolic process | SoyBase | N/A | ISS |
| GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process | SoyBase | N/A | ISS |
| GO:0006766 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process | SoyBase | N/A | ISS |
| GO:0008652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: serine family amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0009072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process | SoyBase | N/A | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0009106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process | SoyBase | N/A | ISS |
| GO:0009108 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process | SoyBase | N/A | ISS |
| GO:0009117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019748 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary metabolic process | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0044272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004765 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: shikimate kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PTHR21087 | Panther | SHIKIMATE KINASE | JGI | ISS | |
| PF01202 | PFAM | Shikimate kinase | JGI | ISS | |
| PF04969 | PFAM | CS domain | JGI | ISS | |
| UniRef100_G7KCE4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Shikimate kinase-like protein n=1 Tax=Medicago truncatula RepID=G7KCE4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336DD7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336DD7 related cluster n=1 Tax=unknown RepID=UPI0002336DD7 | SoyBase | E_val: 0 | ISS |
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Glyma01g01890 not represented in the dataset |
Glyma01g01890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g014900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g01890.2 sequence type=CDS gene model=Glyma01g01890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAAAATCAATTGTCCAAATGAAGAAAGAAGCAAGAAATTGGGTTACTCGGAGCAGCCCAAGTCCAAGGAACCACATAAGCAAAAACGAAGGCATCATAGTATCATATTGTTATCTGAAATGGCAACTGTTCCTGCTCGTCTCTGTTATCTCTCCACAAACCCCACAACCAGAAACCTCAACTTCTCAGTTTTAAAACCAAATGTGTTGTCACTGCGTTCATTCTCTCTTCCTCAAAAACACTATCTTCGTCTCCGTCCCTGCAAGTGTTCCTCCACCGCCCCCGTGTCCACCACCACCTACGAGTTTTCTGATGGTTCTTCGGAGGTGGAGTTAAGATTAAACATAGGAGGTTTGGATGTCCGAAGCTCCAGAGATATATTGGTTGATACAAATGATACCTCTTTAGCTATCAGAGTGTTGCGGCCAGGATCTCCCATCACACTCATAGAAACTAATCCTCTTTTTGATAGGGTTAAATCCTCCGAAACAATATGGTATATAGATGATGATCAACTTGTTGTGAACTTCAAGAAACAGGACCCAGATTTGAAATGGCCTGACATCATGGAGTCCTGGGAATCACTTACTGCAGGATCTCCACAACTTTTACAAGGGACATCCATCTATCTTGTTGGTGATTCAACCGAAATCAATCAAAAAGTGGCTCAAGAGCTAGCAACTGGTCTTGGGTACACTCCACTGAGCACGAAAGAGTTACTGGAATTATATACTAAGCAGACTGTGGATTCATGGCTGCTCGCTGAAGGCTCTGACTCAGTAGCAGAAGCAGAAAGTGCTGTACTTGAAAGCATAAGTAGTCATGCTAGGGCTGTAGTTGCAACATTAGGAGGGCAACACAGTGCTGCTGGAAGAGCTGGTAAATGGCAACATCTTTATGCAGGATTTACTGTCTGGTTGTCAAAGACTGAAGCACTAGATGAAGATTCTGCAAGGCTGGAGACCCATAAAAACGTCAAAGATGGCATAATTTCATACACAAATGCAGATGTAGTTGTTAAGCTACAGGGCTGGGATCCTGCTTATGCCAAAAGTGTGGCACAAGCATGTTTAAGTGCCCTAAAACAGTTAATCCAGTCAGACAAGAAACTTCCAGGTAAAAAAAGCCTCTACATAAGATTGGGATGTCGGGGTGATTGGCCAAACATCAAACCCCCTGGTTGGGATCCATCAAGTGAAGGTAACACAACTCTTGGTACACAGTTATGA
>Glyma01g01890.2 sequence type=predicted peptide gene model=Glyma01g01890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKINCPNEERSKKLGYSEQPKSKEPHKQKRRHHSIILLSEMATVPARLCYLSTNPTTRNLNFSVLKPNVLSLRSFSLPQKHYLRLRPCKCSSTAPVSTTTYEFSDGSSEVELRLNIGGLDVRSSRDILVDTNDTSLAIRVLRPGSPITLIETNPLFDRVKSSETIWYIDDDQLVVNFKKQDPDLKWPDIMESWESLTAGSPQLLQGTSIYLVGDSTEINQKVAQELATGLGYTPLSTKELLELYTKQTVDSWLLAEGSDSVAEAESAVLESISSHARAVVATLGGQHSAAGRAGKWQHLYAGFTVWLSKTEALDEDSARLETHKNVKDGIISYTNADVVVKLQGWDPAYAKSVAQACLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKPPGWDPSSEGNTTLGTQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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