Report for Sequence Feature Glyma01g01830
Feature Type: gene_model
Chromosome: Gm01
Start: 1394337
stop: 1398687
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g01830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G32220 AT
Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr1:11608038-11609591 FORWARD LENGTH=296
SoyBase E_val: 4.00E-150 ISS
GO:0006979 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to oxidative stress
SoyBase N/A ISS
GO:0042631 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation
SoyBase N/A ISS
GO:0044237 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular metabolic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009579 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: thylakoid
SoyBase N/A ISS
GO:0010287 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0050662 GO-mf
Annotation by Michelle Graham. GO Molecular Function: coenzyme binding
SoyBase N/A ISS
KOG4288
KOG
Predicted oxidoreductase
JGI ISS
PTHR12126 Panther
NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED
JGI ISS
PTHR12126:SF2 Panther
UNCHARACTERIZED
JGI ISS
PF01370 PFAM
NAD dependent epimerase/dehydratase family
JGI ISS
UniRef100_B6TV09 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 3-beta hydroxysteroid dehydrogenase/isomerase family protein n=1 Tax=Zea mays RepID=B6TV09_MAIZE
SoyBase E_val: 4.00E-151 ISS
UniRef100_I1J4R0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4R0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g01830
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g01830
Paralog Evidence Comments
Glyma09g34090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g01830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g014400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g01830
Transcripts of Glyma01g01830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g01830.2 sequence type=transcript gene model=Glyma01g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATATAGCGTGGTGGATGGAAAGTCCAACTTTCACTCATTCATTCATTCTTCTTCTTCTTCTGGTGCTAAGTGCCTAAGCTCAAATGGCGTCGTTTTTGTCTTTTCTCCCTGCCGTTTCCGCTCGTCCCATTCCCACCAGCGCCTTCTCTCCCAAAAGACCTCTCTTTCAAACTCCACCCACCTTGCATTTCAAAAATCACCGGTTTGCAGTTAGTTGCAGTTATGCAGAAGCAGGTGTCTATGCTAATTCTAGCTCTAACACCATAGATGTTGTGGCTGATGTTAGAAGTGAGCGGATTGTAGTCTTAGGAGGGAATGGCTTTGTTGGTTCTTCCATATGCAAGGCAGCAGTGTCCAAGGGCATAGAAGTCATAAGCCTAAGCAGGTCAGGGAGACCTACTTACTCAGGTGCATGGGTAGATCAAGTTACTTGGATTTCAGGAGATGTTTTTTATGTAAACTGGGATGAAGTACTTGTTGGAGCTACTGCAGTTGTTTCAACACTTGGAGGTTTTGGTAGTGAGGAACAGATGAAAAGAATTAATGGGGAGGCTAATGTTGTGGCTGTGAATGCTGCAAAAGAATATGGAATTCCCAAATTCATCCTGATCTCAGTTCATGATTATAATTTACCATCATTTTTACTTTCATCTGGGTACTTTACGGGAAAGAGGAAAGCAGAATCCGAGGTTCTCTCCAAATACCCCAATTCAGCATCACCTGATCTTCAAATGATTGTTGAAATGGCTATTTAAAAACTATCAGAGCTAAAGTTCACTGAGGATCCGGCAACTGATTTTGTGGAAGATGAGTATCATGCTTTTGAAGGATATAAAGCTAACTAAATGGATAGGCCTTATTGTTTTTATTGAATTGCATTCTTGACAGTTCACTATGATCTTAACATCTTCAGGTATTGTCTTAAGACCTGCTTTCATATATGGCAAGAGGAGAGTGGATGGTTTTGAGCTTCCTTTGGATTTGGTAGGGGAGCCAGCAGAAAAAATTCTACGAGCAGTAGAGAACTTCACCAAACCTCTAAGCTCTCTTCCTGCATCTGATCTACTCTTGGCTCCACCTGTTAGTGTTGACGATGTTGCGTTGGCTGTTATCAATGGTGTCACAGATGATGACTTCTTTGGTATTTTTACAATTGACCAGATCAAGGAAGCTGCCAATAAAGTACGGGTATGAATATGATCCTCATATAGTGCTGCAATTTACAATAATTGTACAGGCCAGGAGAAACTACAATGAGGCCATTTTCCTCATGTTAATACCGGCAGCTTTTGGAGCACAATCTTTTTAAGGGAGTAGTGTGTGGGGAGAATGGTGTTAAAAACATATTGAATGTACTAAACGAGGTTCATATCTTTTTTTCGTTATACAAGTATTGTTAGTTTATGATTGGACCATTTTCGTGTCTGTAAGTTCTCAAACCAGTGACTTAATTAGAGGCCAATAGTTAGATTTGTAAATACAAACTGCAGTGTTAGTATCTATTTCGTTTTGCATGCTGCATTGGAATATGAT
Coding sequences of Glyma01g01830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g01830.1 sequence type=CDS gene model=Glyma01g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGTCGTTTTTGTCTTTTCTCCCTGCCGTTTCCGCTCGTCCCATTCCCACCAGCGCCTTCTCTCCCAAAAGACCTCTCTTTCAAACTCCACCCACCTTGCATTTCAAAAATCACCGGTTTGCAGTTAGTTGCAGTTATGCAGAAGCAGGTGTCTATGCTAATTCTAGCTCTAACACCATAGATGTTGTGGCTGATGTTAGAAGTGAGCGGATTGTAGTCTTAGGAGGGAATGGCTTTGTTGGTTCTTCCATATGCAAGGCAGCAGTGTCCAAGGGCATAGAAGTCATAAGCCTAAGCAGGTCAGGGAGACCTACTTACTCAGGTGCATGGGTAGATCAAGTTACTTGGATTTCAGGAGATGTTTTTTATGTAAACTGGGATGAAGTACTTGTTGGAGCTACTGCAGTTGTTTCAACACTTGGAGGTTTTGGTAGTGAGGAACAGATGAAAAGAATTAATGGGGAGGCTAATGTTGTGGCTGTGAATGCTGCAAAAGAATATGGAATTCCCAAATTCATCCTGATCTCAGTTCATGATTATAATTTACCATCATTTTTACTTTCATCTGGGTACTTTACGGGAAAGAGGAAAGCAGAATCCGAGGTTCTCTCCAAATACCCCAATTCAGGTATTGTCTTAAGACCTGCTTTCATATATGGCAAGAGGAGAGTGGATGGTTTTGAGCTTCCTTTGGATTTGGTAGGGGAGCCAGCAGAAAAAATTCTACGAGCAGTAGAGAACTTCACCAAACCTCTAAGCTCTCTTCCTGCATCTGATCTACTCTTGGCTCCACCTGTTAGTGTTGACGATGTTGCGTTGGCTGTTATCAATGGTGTCACAGATGATGACTTCTTTGGTATTTTTACAATTGACCAGATCAAGGAAGCTGCCAATAAAGTACGGGTATGA
>Glyma01g01830.2 sequence type=CDS gene model=Glyma01g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGTCGTTTTTGTCTTTTCTCCCTGCCGTTTCCGCTCGTCCCATTCCCACCAGCGCCTTCTCTCCCAAAAGACCTCTCTTTCAAACTCCACCCACCTTGCATTTCAAAAATCACCGGTTTGCAGTTAGTTGCAGTTATGCAGAAGCAGGTGTCTATGCTAATTCTAGCTCTAACACCATAGATGTTGTGGCTGATGTTAGAAGTGAGCGGATTGTAGTCTTAGGAGGGAATGGCTTTGTTGGTTCTTCCATATGCAAGGCAGCAGTGTCCAAGGGCATAGAAGTCATAAGCCTAAGCAGGTCAGGGAGACCTACTTACTCAGGTGCATGGGTAGATCAAGTTACTTGGATTTCAGGAGATGTTTTTTATGTAAACTGGGATGAAGTACTTGTTGGAGCTACTGCAGTTGTTTCAACACTTGGAGGTTTTGGTAGTGAGGAACAGATGAAAAGAATTAATGGGGAGGCTAATGTTGTGGCTGTGAATGCTGCAAAAGAATATGGAATTCCCAAATTCATCCTGATCTCAGTTCATGATTATAATTTACCATCATTTTTACTTTCATCTGGGTACTTTACGGGAAAGAGGAAAGCAGAATCCGAGGTTCTCTCCAAATACCCCAATTCAGCATCACCTGATCTTCAAATGATTGTTGAAATGGCTATTTAA
Predicted protein sequences of Glyma01g01830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g01830.1 sequence type=predicted peptide gene model=Glyma01g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASFLSFLPAVSARPIPTSAFSPKRPLFQTPPTLHFKNHRFAVSCSYAEAGVYANSSSNTIDVVADVRSERIVVLGGNGFVGSSICKAAVSKGIEVISLSRSGRPTYSGAWVDQVTWISGDVFYVNWDEVLVGATAVVSTLGGFGSEEQMKRINGEANVVAVNAAKEYGIPKFILISVHDYNLPSFLLSSGYFTGKRKAESEVLSKYPNSGIVLRPAFIYGKRRVDGFELPLDLVGEPAEKILRAVENFTKPLSSLPASDLLLAPPVSVDDVALAVINGVTDDDFFGIFTIDQIKEAANKVRV*
>Glyma01g01830.2 sequence type=predicted peptide gene model=Glyma01g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASFLSFLPAVSARPIPTSAFSPKRPLFQTPPTLHFKNHRFAVSCSYAEAGVYANSSSNTIDVVADVRSERIVVLGGNGFVGSSICKAAVSKGIEVISLSRSGRPTYSGAWVDQVTWISGDVFYVNWDEVLVGATAVVSTLGGFGSEEQMKRINGEANVVAVNAAKEYGIPKFILISVHDYNLPSFLLSSGYFTGKRKAESEVLSKYPNSASPDLQMIVEMAI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
