SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G35530 | AT | Annotation by Michelle Graham. TAIR10: basic region/leucine zipper transcription factor 16 | chr2:14923280-14926025 REVERSE LENGTH=409 | SoyBase | E_val: 1.00E-161 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006473 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein acetylation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PTHR22952 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PTHR22952:SF36 | Panther | JGI | ISS | ||
| PTHR23351 | Panther | FOS TRANSCRIPTION FACTOR-RELATED | JGI | ISS | |
| PTHR23351:SF24 | Panther | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | JGI | ISS | |
| PF00170 | PFAM | bZIP transcription factor | JGI | ISS | |
| PF07777 | PFAM | G-box binding protein MFMR | JGI | ISS | |
| UniRef100_I1J4P8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4P8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q94KA7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor 3 n=1 Tax=Phaseolus vulgaris RepID=Q94KA7_PHAVU | SoyBase | E_val: 0 | ISS |
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Glyma01g01740 not represented in the dataset |
Glyma01g01740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g34170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g013600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g01740.2 sequence type=transcript gene model=Glyma01g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGAAAAACATTAACCAAAAAAAGGAAAAAGGAAATCTGTGGGCATAGGGAGTAAATGGGGATTTCACAAACTGTGCAAAATGGGAAGGAAAATCTCACTGGACAGCGACACCGTACGACGATTCATGGGTTCCTCTCCGTCAACACCCAAAGCCAAACAAACAAACATTAACCTTAACCAAACAAACCCTAAGTTTTGATCTGCCTCTCATTCTTTGTTCCCTTCTCATCCATTCCTAAATAAATTCTAGATAATTTTTTTCCGTTATATTTCCTAAATAAAATTCCCCGATTAACCATCGTGCTACCCACAAAATCTAATCTTCTTCCCATTTTTTTCTGAGCATTTAGCTGTCGCTTCCTTTTGTTTGTTTTTTGTCATCCTCGGCAGATCAGGTTTTGTTTTTGCTTCTGCTCCAGCTTTGGAGGATCCACAGTTTCTCTCTGAGTGGGTGGTTTAATGTATATTTTGAAGATACTGATATAAGTATGGGCAGCAGTGAGATGGATAAAACTCCAAAAGAGAAGGAGTCAAAGACGCCGCCACCACCACCTACGTCACAGGAGCAGTCTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGCAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCAGGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAACCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGTGGTGAGAGTGCAAGTGAAGGCGAAGGTACTAGTGAAGGAAGTGATGCCAATTCTCAAAATGACTCTCAATTGAAATCTGGGGGCAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCAGTTTGGCATATACTGCTCAAAATGGGGGACTAAATACACCTCATACAGTAGTCAATCAAACTATGTCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACGACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCATCCAACATTCCTGCACTTGGCAGAAAGGTTCCATCTACTGCAGTTGCTGGAGGGATGGTTACCGTTGGATCTCGGGATAGTGCTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGTAGGTCCAGGTTGCGAAAGCAGGTAATGGAGAGTACCCTATGGTGATTTCCTTCTGTGGTTGGTTGATCATAAGTCACATCTAACTTCTGTTTGAGTTTTTCTTAAAGGCTGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTCTGAAGTAAATCGAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGACAGAGGCCATGCCGGGCGGTCAGTAGCACCAACCAACCACTGCATGCCTCTTTTCAGAGAGATAATCTAACTTAAATAGCAAGAGCAAGATCTTGTTTCGGATAGCTTGTAGTTCAAATTGTATTAAAGCTGATCATTTATAGTCTTAAGATCTGTTTAATGTTATATGATCCTTCATTCCTAATTTGCCTTTTATTTTCCCACTCATTCAAAACAACCTGGATTGTTATGTAGTGTGTGAATTGTGTCATACCTTATCTTCAGCTCCAAAGTTAGTGTTCCCATTAAGTAAGCAATATAGTTAACGGTGTTGTCCATTATATCATTTCATGTACAAATGATTTATCAGGAAAATAAAGAAGAGAAAATCTCTGATGCTTTGACAAGCTTTCTATCTA
>Glyma01g01740.1 sequence type=CDS gene model=Glyma01g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCAGTGAGATGGATAAAACTCCAAAAGAGAAGGAGTCAAAGACGCCGCCACCACCACCTACGTCACAGGAGCAGTCTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGCAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCAGGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAACCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGTGGTGAGAGTGCAAGTGAAGGCGAAGGTACTAGTGAAGGAAGTGATGCCAATTCTCAAAATGACTCTCAATTGAAATCTGGGGGCAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCAGTTTGGCATATACTGCTCAAAATGGGGGACTAAATACACCTCATACAGTAGTCAATCAAACTATGTCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACGACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCATCCAACATTCCTGCACTTGGCAGAAAGGTTCCATCTACTGCAGTTGCTGGAGGGATGGTTACCGTTGGATCTCGGGATAGTGCTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGTAGGTCCAGGTTGCGAAAGCAGGCTGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTCTGAAGTAAATCGAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGACAGAGGCCATGCCGGGCGGTCAGTAG >Glyma01g01740.2 sequence type=CDS gene model=Glyma01g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCAGTGAGATGGATAAAACTCCAAAAGAGAAGGAGTCAAAGACGCCGCCACCACCACCTACGTCACAGGAGCAGTCTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGCAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCAGGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAACCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGTGGTGAGAGTGCAAGTGAAGGCGAAGGTACTAGTGAAGGAAGTGATGCCAATTCTCAAAATGACTCTCAATTGAAATCTGGGGGCAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCAGTTTGGCATATACTGCTCAAAATGGGGGACTAAATACACCTCATACAGTAGTCAATCAAACTATGTCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACGACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCATCCAACATTCCTGCACTTGGCAGAAAGGTTCCATCTACTGCAGTTGCTGGAGGGATGGTTACCGTTGGATCTCGGGATAGTGCTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGTAGGTCCAGGTTGCGAAAGCAGGTAATGGAGAGTACCCTATGGTGA
>Glyma01g01740.1 sequence type=predicted peptide gene model=Glyma01g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSSEMDKTPKEKESKTPPPPPTSQEQSSTTSTGTINPEWPGFQAYSPIPPHGFLASNPQAHPYMWGVQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTPGTSANGIHSKSGESASEGEGTSEGSDANSQNDSQLKSGGRQDSFEDEPSQNGSLAYTAQNGGLNTPHTVVNQTMSIIPISAGGAPGAVPGPTTNLNIGMDYWGTPASSNIPALGRKVPSTAVAGGMVTVGSRDSAQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVNRIRSDYEQLVSENSALKERLGELPANDDHHRSCRNDQHVGNDTQQSGQTEAMPGGQ* >Glyma01g01740.2 sequence type=predicted peptide gene model=Glyma01g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSSEMDKTPKEKESKTPPPPPTSQEQSSTTSTGTINPEWPGFQAYSPIPPHGFLASNPQAHPYMWGVQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTPGTSANGIHSKSGESASEGEGTSEGSDANSQNDSQLKSGGRQDSFEDEPSQNGSLAYTAQNGGLNTPHTVVNQTMSIIPISAGGAPGAVPGPTTNLNIGMDYWGTPASSNIPALGRKVPSTAVAGGMVTVGSRDSAQSQLWLQDERELKRQRRKQSNRESARRSRLRKQVMESTLW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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