SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16070 | AT | Annotation by Michelle Graham. TAIR10: Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 | chr4:9096808-9100596 REVERSE LENGTH=654 | SoyBase | E_val: 1.00E-78 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0016042 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid catabolic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004806 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity | SoyBase | N/A | ISS |
| KOG2088 | KOG | Predicted lipase/calmodulin-binding heat-shock protein | JGI | ISS | |
| PTHR21493 | Panther | CGI-141-RELATED/LIPASE CONTAINING PROTEIN | JGI | ISS | |
| PTHR21493:SF2 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01764 | PFAM | Lipase (class 3) | JGI | ISS | |
| UniRef100_B9RTA9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Triacylglycerol lipase, putative n=1 Tax=Ricinus communis RepID=B9RTA9_RICCO | SoyBase | E_val: 2.00E-92 | ISS |
| UniRef100_UPI0002336CC2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336CC2 related cluster n=1 Tax=unknown RepID=UPI0002336CC2 | SoyBase | E_val: 0 | ISS |
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Glyma01g01510 not represented in the dataset |
Glyma01g01510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g34250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g011600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g01510.1 sequence type=CDS gene model=Glyma01g01510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGTGAAGAATGAAAAGAAAGCCCCGAGTGTTGAAAGGAGGCATATTGAGGCGCCCAAAAATTTGATGGAGGTAGTGTCCATATTAACGGAAGCCATAAAGTCGCTCGGTTACAAGGAGAAATGGCACATCCTCAACTTGCCCATAGCCATTGCTTCCGCTGTGTTGGACATGGGTAAGAAAACAGTTGCAAGAGAATGCGGTGAAAGAAGTGATTGTGTACAGCTGAAGGCCCCCGAAGTCATAAAGGAGTTATATGAGATAAAGAAATTGTTGACACGGACCTTGCTTTTCAGCAGAAAACGGTTTCATGGGTTCTTATTTGCTGCTGGATTCGACAAGGAGGATGTCCTCCTAAGAAAGAGAACAGCTCGGATTCTAAGGCCAGTTTTCACAGTTATACGTGATATAGAATCAAAAAGTGTGTTGGTGTTTATTCGGGGAACTCGTAGCCTAAACGACACGCTAACAGCTGCACTCTGTGCTCCCGTCTCCTTCGAGCATAGGAGGAACAACAACATTGTTTCAGGACATGCACACCGTGGTATGGTTGCTGCAGCTTATTGGATTCTAGACTACTGCACTCCTGTACTAAAAAAGGCTCTTGATCAATACCCCCACTTCAAAATCAAGATCGTTGGGCACTCGCTTGGTGGTGGTACCGCTGCACTGCTGACATTTAAGCTAAGAGAAATACAAGAGTTCTCTTCAAGCACTTGTGTCACGTTTGGCCCAGCTGCCTGTATGACATTGGAGTTAGCCGAATTTGGGAAGCCCTTTATCATTTCCATTATCAATGGTTATGACATAGTGCCTACATTGTCAGTTTCTTCTGTTCATGATTTCATTTCTGAGGGTCGCGATCGGAGCAATGATCAAAACATCCTAACCGCAGTTAGATCTCACATACCAATCGCAAAAGCCATTGCAGGACATGCAATAACCCGCTGCACAGAGGTTGTGAAGAAACATAAACACGGAACTCGCTCATTGCTTCCCTGGCACATACGTGAGAATATTGACTCATCGCCAAGCTCAAAATCAGATAACATAGCTGAAGCTTATGGATCATCTGAGACAAATTTTGAATCTCTCTTGACTGAAGAGCACTTAATCATGGAGTCTATGTCAGATGATGACGAATATAATTCTTCTAGTGAAGGATCTGACGGTGATGACTCCGATGGCGACGAAGACGAATTGTCGAATAAAGTGGGGAAGCTTAAACTGGGAAAAGAAGTAGCCACAAACAAAAACATAGCTGAAGAAGAGAGTGATTGTCCAATCACAACATCAAGTAGACGTCGTCTTTATCCTCCCGGAAGGATCATGCATATTATTCCTATTGCACATTCGTCTGAAAATCCTAATTCAAACCACAATGGTTGTGATGAGAAACATGTTTCCCTATATGAAACGCCTAGAGAGCTCTATGGAAAGCTCAGACTTTCAAGAAGGATGATACTTGATCATAAGTCAAACAAGTATCTGAAGGTGTTACAACAATTAATCAATCAACTAGAGAAAGAGAGCTTCAAATATCATGGAGGATGA
>Glyma01g01510.1 sequence type=predicted peptide gene model=Glyma01g01510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVKNEKKAPSVERRHIEAPKNLMEVVSILTEAIKSLGYKEKWHILNLPIAIASAVLDMGKKTVARECGERSDCVQLKAPEVIKELYEIKKLLTRTLLFSRKRFHGFLFAAGFDKEDVLLRKRTARILRPVFTVIRDIESKSVLVFIRGTRSLNDTLTAALCAPVSFEHRRNNNIVSGHAHRGMVAAAYWILDYCTPVLKKALDQYPHFKIKIVGHSLGGGTAALLTFKLREIQEFSSSTCVTFGPAACMTLELAEFGKPFIISIINGYDIVPTLSVSSVHDFISEGRDRSNDQNILTAVRSHIPIAKAIAGHAITRCTEVVKKHKHGTRSLLPWHIRENIDSSPSSKSDNIAEAYGSSETNFESLLTEEHLIMESMSDDDEYNSSSEGSDGDDSDGDEDELSNKVGKLKLGKEVATNKNIAEEESDCPITTSSRRRLYPPGRIMHIIPIAHSSENPNSNHNGCDEKHVSLYETPRELYGKLRLSRRMILDHKSNKYLKVLQQLINQLEKESFKYHGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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