Glyma01g01480 - SoyBase

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Report for Sequence Feature Glyma01g01480

Feature Type:	gene_model
Chromosome:	Gm01
Start:	1088032
stop:	1090516
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g01480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31920	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:11461864-11463684 REVERSE LENGTH=606	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF121	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7K9K3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K9K3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023372DB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023372DB related cluster n=1 Tax=unknown RepID=UPI00023372DB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g01480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g01480

Paralog	Evidence	Comments
Glyma09g34285	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g01480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g011300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g01480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g01480

Limit To All Plant Sequences

>Glyma01g01480.1   sequence type=CDS   gene model=Glyma01g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGGACATCTGTCCTTTGCCAATCCCATCTTTTGTCACTGCCAAATAGTCCACCCCAAAGCTCTGAATTGAATGCAAAGTTCAATGAGCAGGGATGGTTGTCTTTGCTCAAGAGATGCAAGAGCATGGAAGAATTCAAGCAAGTACATGCCCATATTCTAAAATTGGGTCTCTTCTATGATTCTTTCTGTGGCAGCAATCTTGTTGCCTCTTGTGCTCTATCTAGATGGGGCAGCATGGAGTATGCTTGCTCAATCTTCAGTCAGATTGAGGAACCTGGTAGCTTTGAGTACAATACCATGATTAGAGGAAATGTCAATAGCATGGATCTAGAAGAAGCTTTGTTGCTTTATGTTGAGATGCTTGAAAGAGGAATTGAACCTGACAACTTCACCTACCCGTTTGTGCTCAAGGCATGCTCTCTATTAGTTGCTCTCAAGGAAGGAGTGCAAATTCATGCTCATGTTTTTAAGGCTGGTCTTGAGGTTGATGTCTTTGTGCAAAATGGCTTGATTAGCATGTATGGCAAGTGTGGGGCAATAGAGCATGCTGGTGTTGTGTTTGAGCAAATGGATGAAAAGAGTGTGGCTTCGTGGAGTTCCATCATTGGTGCTCATGCTAGTGTGGAGATGTGGCATGAGTGCTTGATGCTTCTTGGGGACATGAGCGGCGAGGGACGCCATAGGGCTGAAGAGAGCATTCTGGTTAGTGCACTTTCTGCTTGCACTCATTTGGGGTCTCCTAATCTTGGAAGGTGCATACATGGGATCTTGTTGAGGAACATCAGTGAACTCAATGTTGTTGTGAAGACTTCATTAATTGATATGTATGTCAAGTGTGGGAGCCTTGAGAAAGGGCTTTGTGTGTTCCAAAATATGGCTCATAAGAATAGATACTCTTACACTGTAATGATCGCGGGGCTTGCCATTCATGGGCGCGGTAGGGAAGCTGTAAGAGTTTTCTCTGACATGCTGGAGGAAGGTTTGACACCAGATGATGTTGTCTATGTGGGTGTGTTAAGTGCTTGCAGTCATGCTGGTCTTGTCAATGAGGGTCTTCAATGTTTCAACCGCATGCAATTTGAGCATATGATTAAACCAACAATTCAGCACTATGGTTGTATGGTGGATCTTATGGGGAGAGCTGGGATGCTAAAGGAAGCCTATGACCTCATAAAAAGCATGCCAATTAAGCCTAATGATGTGGTTTGGAGGAGCCTTCTTAGTGCTTGTAAGGTTCACCATAACTTGGAAATAGGGGAGATTGCAGCTGAGAATATTTTCAGGTTGAATAAACACAATCCCGGGGACTATTTGGTGCTAGCAAATATGTATGCAAGGGCTAAAAAATGGGCTAATGTAGCCAGGATCAGAACAGAAATGGCTGAAAAACACTTGGTGCAAACACCTGGGTTCAGTTTGGTTGAAGCAAATAGGAATGTATACAAGTTTGTTTCGCAGGACAAGTCTCAACCAATATGTGAAACCATCTATGATATGATTCAACAAATGGAATGGCAGTTGAAATTTGAAGGCTATACACCAGACATGTCACAGGTGTTGCTTGATGTGGATGAAGATGAAAAGAGGCAGAGACTGAAACATCATAGTCAGAAGTTGGCAATTGCTTTTGCACTAATACAGACATCGGAGGGATCTCCCATAAGAATATCAAGAAATCTTAGGATGTGTAATGACTGTCATACTTACACTAAGTTCATTTCCGTGATCTATGAACGGGAAATTACTGTGAGAGACCGTAATCGCTTCCACCATTTCAAAGATGGAACTTGCTCATGTAAAGATTATTGGTGA

Predicted protein sequences of Glyma01g01480

Limit To All Plant Sequences

>Glyma01g01480.1   sequence type=predicted peptide   gene model=Glyma01g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGTSVLCQSHLLSLPNSPPQSSELNAKFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW*

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