Glyma01g01470 - SoyBase

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Report for Sequence Feature Glyma01g01470

Feature Type:	gene_model
Chromosome:	Gm01
Start:	1066131
stop:	1073350
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g01470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31930	AT	Annotation by Michelle Graham. TAIR10: extra-large GTP-binding protein 3 \| chr1:11465832-11468961 FORWARD LENGTH=848	SoyBase	E_val: 0	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007186	GO-bp	Annotation by Michelle Graham. GO Biological Process: G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0007188	GO-bp	Annotation by Michelle Graham. GO Biological Process: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009652	GO-bp	Annotation by Michelle Graham. GO Biological Process: thigmotropism	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0010555	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mannitol stimulus	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:2000067	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of root morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0031234	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to internal side of plasma membrane	SoyBase	N/A	ISS
GO:0001664	GO-mf	Annotation by Michelle Graham. GO Molecular Function: G-protein coupled receptor binding	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0019001	GO-mf	Annotation by Michelle Graham. GO Molecular Function: guanyl nucleotide binding	SoyBase	N/A	ISS
GO:0031683	GO-mf	Annotation by Michelle Graham. GO Molecular Function: G-protein beta/gamma-subunit complex binding	SoyBase	N/A	ISS
KOG0082	KOG	G-protein alpha subunit (small G protein superfamily)	JGI		ISS
PTHR10218	Panther	GTP-BINDING PROTEIN ALPHA SUBUNIT	JGI		ISS
PTHR10218:SF90	Panther	XLG (EXTRA-LARGE GTP-BINDING PROTEIN)	JGI		ISS
PF00503	PFAM	G-protein alpha subunit	JGI		ISS
UniRef100_G7K9K2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Guanine nucleotide-binding protein alpha-2 subunit n=1 Tax=Medicago truncatula RepID=G7K9K2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J4M8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4M8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g01470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g01470

Paralog	Evidence	Comments
Glyma09g34300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g01470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g011200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g01470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g01470

Limit To All Plant Sequences

>Glyma01g01470.1   sequence type=CDS   gene model=Glyma01g01470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAAAATAGGGGAGAGAGCTGGAGGGAATTAGTGAAGAAGATGCTTCCTCCTGGTGCTTCCATACCTGCTGATGCTTCTAATCTTGATTACTCCATAGCAATGGAATATGTTGGTCCACCAGTTTCATATGATGTACCAAGAGTTGAGCCCTTTGACGCAAACTCAAGAGCAATTCCCACTGCTCAACCACTCTCTGGATCACAAAGATCAAGTACTCATGGGGGCCATATGGTGATTGAACCAATCCCTCTACCGGTGTCTCGTATTGCTGGCGTAACGAGCTCTCCTAATCAAAGTCCAAGGGTGTCAGGAAGTTCAGATTCTGTGGTTTCTGTCTTACAGAACCCAGATCTTTCTTCTGCGTCACCTTCGGCTTCGCCTGCTTCAGTTCATAATCCTCCTAGCAATCCTCCTAAGCCAGGTAATGAAGCGAAGAGAGCACCGGTTGTCACTTTTAATACTGTTGATAGACGTCAGAGGAAAGAGGTGGAGGTTGTGAAGCCAGTTTATTCGGAATACGTTGGAGTTTTGAAAGAAAGGAAGAAAAAGAAAATAAGAGTTTGTTATAGGTGTGGAAAAGGGAAGTGGGAAACAAAGGAGTCTTGCATAGTTTGTAATGCCAAGTATTGCAGCAACTGTGTGCTTAGGGCAATGGGATCAATGCCTGAAGGACGTAAATGTGTAACATGCATTGGTCAGCCAATTGATGAATCGAGGAGACTGAAATTGGGTAAATATTCAAGGGTGTTGTCCCGACTGTTAAGTCCTCTAGAAGTCAAGCAAATTATGAAAGCAGAGAAAGAATGTTCTGCTAATCAGCTTCGGCCAGAGCAGTTGATTGTCAATGGATTGCCCCTGAAGCCTGAAGAGATGGCAGAATTACTTGGATGTCCCTTACCTCCACGTAAGCTGAAGCCTGGTAGATATTGGTATGACAAAGAATCTGGTCTCTGGGGAAAGGAAGGGGAAAAACCTGACAGAATCATAAGTTCAAACTTGAATTTCACTGGGAAACTTAGCCTCGATGCTAGTAATGGAAACACCGAGGTTTACATGAATGGTCGAGAGATCACAAAACTTGAATTGAGGGTACTCAAGCTGGCAAATGTGCAGTGTCCACGTGATACACACTTTTGGGTCTATGACGATGGTCGTTATGAGGAGGAAGGTCAAAATAATATCAGAGGAAACATTTGGGAGAAGGCCTCAACAAGATTCGTATGTGCCTTATTCTCTCTACCCTTTCCCCATGGTCAGCCTCATGGGCAAAAGGATGAAACTAGTCACTATACCACAGTTCCTAATTATCTGGAACAGAAAAAGACTCAGAAGCTTCTTCTTCTTGGAATTCAAGGATCTGGCACTAGCACTATATTTAAGCAGGCCAAGTTTTTGTATGGGAACAGATTTTCTGATGAAGAGCTTCAGGATGTCAAATTGATGATCCAGAGTAACATGTATAAATATCTTAGTATTTTACTTGATGGAAGAGAGCGCTTTGAAGAGGAGGCTGTTTCTAGAATGAATGGACAAGGTTCTCCCGGTCAAACTATGGAAACAGGTAGCAATGGTGAAGCAAGTAATACTAGTGAATGCATCTATTCCCTCAACCCAAGGCTAAAACATTTCTCTGACTGGCTCCTGGACATTATAGCCACTGGGGATTTAGATGCCTTCTTCCCTGCAGCCACGCGGGAATATGCACCATTAGTTGAAGAAGTATGGAGGGACCCTGCAATACAAGAAACCTTCAAAAGAAAAGATGAGCTTCACTTTCTTCCAGATGTTGCCGAGTACTTCTTAAGCCGGGCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTATATGCAGAAGGGGTTACTCAGGGAAATGGTTTGGCTTTCATGGAGTTTTCTCTTGATGACCGTGTCCCAAAGTCTGATACTTATTTGGAGAACTTGGATGCTCAGCTGCCACCACTGACCAAGTATCAACTCATTAGGGTGAATGCCAAGGGCCTAAATGAGGGCTGTAAGTGGGTTGAAATGTTCGAAGATGTTCGAGCCGTGGTCTTTTGCGTTTCCCTAAGCGACTACGATCAGTTGTCGCTTTCCCCAGACAGTAGTGGCAGTGGAACACTTGTTCAAAACAAGATGGTACAAAGCAAGGAGCTTTTCGAGACGATGGTGAGGCACCCTTGCTTCAAAGACACCCCTTTGGTGCTAGTCCTTAACAAGTATGATATCTTTGAGGAAAAGATTAGCAGGGTGTCCCTAAATACATGTGAATGGTTCAGCGATTTTTGTCCAGTTCGTGCACACCATAATAACCAATCACTGGCCCATCAAGCCTACTTCTATGTTGCCATGAAATTCAAGGACCTTTATGCATCCCTCACAGGGAAAAAACTCTTTGTGGCACAAGCCAGGGCAAGGGACCGAGTAACTGTTGATGAGGCATTCAAGTACATAAAAGAGATCCTGAAATGGGATGAAGAGAAGGAGGAGAATTTCTATGGTCCACCTGAGGATTCATTTTACAGCACAGACATAAGCTCCTCTCCCTTTATCAGACAAGAGTGA

Predicted protein sequences of Glyma01g01470

Limit To All Plant Sequences

>Glyma01g01470.1   sequence type=predicted peptide   gene model=Glyma01g01470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQNRGESWRELVKKMLPPGASIPADASNLDYSIAMEYVGPPVSYDVPRVEPFDANSRAIPTAQPLSGSQRSSTHGGHMVIEPIPLPVSRIAGVTSSPNQSPRVSGSSDSVVSVLQNPDLSSASPSASPASVHNPPSNPPKPGNEAKRAPVVTFNTVDRRQRKEVEVVKPVYSEYVGVLKERKKKKIRVCYRCGKGKWETKESCIVCNAKYCSNCVLRAMGSMPEGRKCVTCIGQPIDESRRLKLGKYSRVLSRLLSPLEVKQIMKAEKECSANQLRPEQLIVNGLPLKPEEMAELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNLNFTGKLSLDASNGNTEVYMNGREITKLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPFPHGQPHGQKDETSHYTTVPNYLEQKKTQKLLLLGIQGSGTSTIFKQAKFLYGNRFSDEELQDVKLMIQSNMYKYLSILLDGRERFEEEAVSRMNGQGSPGQTMETGSNGEASNTSECIYSLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWRDPAIQETFKRKDELHFLPDVAEYFLSRAVEISSNEYEPSERDIVYAEGVTQGNGLAFMEFSLDDRVPKSDTYLENLDAQLPPLTKYQLIRVNAKGLNEGCKWVEMFEDVRAVVFCVSLSDYDQLSLSPDSSGSGTLVQNKMVQSKELFETMVRHPCFKDTPLVLVLNKYDIFEEKISRVSLNTCEWFSDFCPVRAHHNNQSLAHQAYFYVAMKFKDLYASLTGKKLFVAQARARDRVTVDEAFKYIKEILKWDEEKEENFYGPPEDSFYSTDISSSPFIRQE*

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