Glyma01g01390 - SoyBase

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Report for Sequence Feature Glyma01g01390

Feature Type:	gene_model
Chromosome:	Gm01
Start:	1008759
stop:	1013501
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g01390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31970	AT	Annotation by Michelle Graham. TAIR10: DEA(D/H)-box RNA helicase family protein \| chr1:11479921-11482707 FORWARD LENGTH=537	SoyBase	E_val: 0	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0331	KOG	ATP-dependent RNA helicase	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF125	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_C6G238	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box RNA helicase n=1 Tax=Glycine max RepID=C6G238_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1J4L9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4L9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g01390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g01390

Paralog	Evidence	Comments
Glyma09g34390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g01390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g010400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g01390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g01390

Limit To All Plant Sequences

>Glyma01g01390.1   sequence type=CDS   gene model=Glyma01g01390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGGAAACACGACGCCGTTTTGGCCAGCGAACCTGTCGCCGAAGAAGCCCCCTGCAGCCCTGAGCTCGATTCCGAGAAGAAGAAGAAGAAGAAAAAGAAGAACAAAAACAAAGACAAGCACCAAACCGAAAGCAGCCCCAAACGAAAGCTCGACGAACACGACCCCCAAAACGGCACCGAATCGAAGAAGAAAAAGAAGAAGCACCACGAGTCCAAGGGGAACGCCGAGGAAACCAACGGCGATAGCAACAACAACAACGGCGATGGTGCTAATCGCGAGGAAACGGCGACGGATGGGTCTGTTGTGGTCACCGGTAACAATGCGGGAGAGGCGAAATACGCCGCGGTGAAGAGCTTCGCGGATTCGGGGCTGCCGGAGAACGTGCTGGAGTGCTGCAAGGGTTTCGAGAAGCCTTCTCCGATTCAGTCCCGGGCGTGGCCTTTCTTATTGGACGGTCGTGATTTGATTGGAATTGCTGCCACTGGCTCAGGGAAGACGTTGGCGTTCGGCATACCGGCGGTTATGCATGTTTTGGGGAAGCGGAAGGGGAAAAGTTCCAAGGGACGAAACCCTCTCGGCCTCGTGCTCTCACCCACTAGAGAGCTAGCTCAACAGATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGCAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGTATCTGTTGCCTAAAAGAAGTATCTTTTGTGGTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATTACTTGGCACAGGAGTTTATGGATCCTAATCCTGTAAAAGTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGGAATCGAGTATTGGTTTTTGTTTTGTACAAATTGGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCACAAAGGCACTCTCATTGTTCAAGAATGCAAGCTGTCCTTTGATGATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGAACTGGACGAGCTGGTAAAAAAGGTGTTGCCCATACATTCTTTATGCAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTCAAAAGAAAACATTTGACGACTCTGATGAAGACTAA

Predicted protein sequences of Glyma01g01390

Limit To All Plant Sequences

>Glyma01g01390.1   sequence type=predicted peptide   gene model=Glyma01g01390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKHDAVLASEPVAEEAPCSPELDSEKKKKKKKKNKNKDKHQTESSPKRKLDEHDPQNGTESKKKKKKHHESKGNAEETNGDSNNNNGDGANREETATDGSVVVTGNNAGEAKYAAVKSFADSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLGKRKGKSSKGRNPLGLVLSPTRELAQQISDVMCDAGRSCGVQSICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGICCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSDRQMVMFSATWPLPVHYLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLVALLEKYHKSQRNRVLVFVLYKLEAKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKNASCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDDSDED*

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