Glyma01g01210 - SoyBase

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Report for Sequence Feature Glyma01g01210

Feature Type:	gene_model
Chromosome:	Gm01
Start:	841604
stop:	854009
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g01210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19930	AT	Annotation by Michelle Graham. TAIR10: RNA-dependent RNA polymerase family protein \| chr2:8607533-8612441 REVERSE LENGTH=977	SoyBase	E_val: 0	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016441	GO-bp	Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0048522	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003968	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA-directed RNA polymerase activity	SoyBase	N/A	ISS
KOG0988	KOG	RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference	JGI		ISS
PTHR23079	Panther	RNA-DEPENDENT RNA POLYMERASE	JGI		ISS
PF05183	PFAM	RNA dependent RNA polymerase	JGI		ISS
UniRef100_D7L6F2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-dependent RNA polymerase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L6F2_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336CB8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336CB8 related cluster n=1 Tax=unknown RepID=UPI0002336CB8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g01210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g01210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g008700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g01210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g01210

Limit To All Plant Sequences

>Glyma01g01210.2   sequence type=CDS   gene model=Glyma01g01210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAAAATCACAACCACCGTGACCTGCTTATTCTTCCGCCCTCGGTGGAGGCTCTGATCGAGAGCATCTGCCGCGACCAGAACCGGCCTCCGCTCGATTACAGCACCCGCCACCGTCTCAAACTACAGGGCGAGGAACAATCCCTTCGCATTCTCAACAAAATCGCCGCCACCCGTATCCGATTATCTTTCGCAGGCTTCGTCAACCACATGCTCGACGACATCAACCACCAAAACAATAATAATAATAACAACAACAACAACAATAACAACAATAATAACAATTCTCACTCTCAACCTGAGCCCTCCACGCGACAACAAACCTCTCCCACGCGCCCTCCCCGACCCACGCCCTCCTCGCTATTGCACGCGCTCGGAGAATTGGAGTTCCGAAAAGCCTTTCTCATTCTCAGTTACATCGGACGAGAGAGTCTTGAGAATTGTATTACTGATGCTAAAATTAGAAGCCTCAAAGACTTGCCGATGGCAAAGTTCGAGAAAACAATATGGGAAGATTTTGGGGAAAAATGCATCTACGATCAAAGTGATCGCCAATTGCATCGTGACTGGAATTCTGGCCGCACACATGTATATCAATGTTTTGTTTTTCCAGATGGGAACTTAAGGTTCAAGGGCCCTATATTACAAAGCACGCGAACACATTTGCAGAAAACTCTCGGTGATGACAATGTTTTGCTAGTTAAATTTGCTGAGGATGGGAGTGGAAAGAATTTTAGGACCCATGCTGAAGAAGCAAATGCCCTCTATGGAAAGTTTGGAAAAGAAGGGATTCGTGTTGGTCTGCGTTTGTATCGCTTTTTTGTTTTTAAAGATGGTGGAAACGAAGAGAAGCAGAAGGACCCAACAAGTTCCACTGTGAAGTGTTATTTTGTTAGGATGCAATCAGGTTGTTCTGCAGATGAGGGTGCTGATTACATTTTGTCTAACAAGACAGTGTCTGAAGCAAGAACTTTATTCATGCATGCTCACATGTTGTTGCCCAATTTGAACAAGTATATGGCTAGGTTCTCTCTCATTCTGTCAAAGACCTTGAAACTCAACATTGACTTGACAACTGTGAGTGTCCAAAAAATACCAGATGAATATTGCAAGGATGCAAATGGCAATATTATGGTTGATAATGAGAAACCACGTATTCTCACGGATGGAACTGGCTTCATCTCTAGAGATTTGGCGTTGCTCTGCCCCAACAATGTTTACAAAGGAAGCAACTTGGAGAACAACTGTATTCAGGAAATTAACAATCTTGTTGAACTTGAGGATATGAGTAATGCAATGGGAGAAGCAGAGCAGCTGAGCACACATGAACCGCCTTTGCTGATTCAGTGCCGTCTCTTTCACATGGGTCATGCAATTAAGGGTACTCTTTTGGTTAACAGAAAGCTTCCTCCTAGGACAATACAGGTTCGACCTTCAATGATTAAAGTTGAGAAAGACCCAAGTGTGCATATGCAAAGCATAAATTCATTGGAGGTAGTAACCACAAGCAACAAGCCAAAGAGAGGATATTTATCTAAACATCTGATTGCACTTCTGAGCTTTGGAGGAGTTCCAAATGAATTCTTCATGGATTTACTTCGGAGTAACATGGAAGATGCAAACCATGTCTACTCCAACAAGCGTTCTGCACTCAGAGCATCCATCAACTGTGGCGAGAAGGATGAATACAATGCAGCAGAAATGATTTTATGTGGCATTCCTTTGGATGAGCCATTTTTGAAGCATCATCTCTCTAGATTTGCGAGGGAGGAAAAAAAGAAACTTAGAGGAGGGAAGCTTTATATGCCTGATTGTTTCTATTTAATGGGGACTGTAGATCCCACTGGACACTTAAAAAAGAATCAAGTTTGTATTATTCATGAGAATAGCCAAATTGTTGGGGATGTTCTGGTTTATAGAAATCCTGGTTTACATTTCGGAGACATTCACAAAATGGATGCCACATATGTGAAGGAGTTAGAGTCATATGTTGGACATAGCAAGTATGGAATTTTTTTCCCACGTGTTGGAACTCGCTCTGTGGCAGATGAGATTGCTGGAGGTGATTTTGATGGTGACACATACTGGGTTTCTAACCATCCTCAGCTATTACAATATTTCAGAAAGGGTGACCCTTGGATCGAAAATTCGGTTCCATTGGATTCTAGTGTTAAAAAGCCAAGTGAATTTTCTCCCGAGGAACTCGAGGAAGAACTTTTTAGACTATTCCTCAAAACTCGGTTTCAACCAAGTTACGCAATGGGCATGTCAGAAAATAGCTGGATGGCACTCATGGATCGTCTTTTGACACTAAATAACTGCACTAATGAGAATGAGAAGGAACGTGTGAAAGAAAATATGCTCAAATTGATTGATATATACTATGAGGCATTAGATGCTCCTAAAAGTGGAAGAAAGGTCCAAGTTCCAAATGATTTAATTGCAGAATTGTTCCCGCACTATATGGAAAAGGATAAATCATTCACTTCAACCTCTATCTTAGGTTTAATTTATGATGAAGTTGAAATCTGGCTAGAAAACGACATGGTAGGAGAAATTTGGAAACTCCCTTGTTTTGATGTTGAAGTACCTCCCAGCTGTTTGGAAAAGTGGAAAACAAAATACGAAGAATATAGGAAGGATATGACTGATGCCTTGAACTTGAAGGACAAATCTAAATCCCACGAAGAGGCAGCTGAAGTCAATAGAAAATATAAGGAGGAATTCTATGGTCCAACTCTTGAGATGGAGGGTTGTCTGAAGAGTATTGGTGATATTTTTAACGAGGCTCTGGCTGTGTATAACGTTAGTTATGAATACGCCATGCTAAAGAAAGAAGTCAAAAGATGTGGCTTTGCATGGAAGATTGCAGGTTCAGCTTTGACTAGGCTTTATATCATAAAACAAAATGAGAAGGCTCTGAATTGTGATCCATCTGTAGTGCGTGAGATTTTTCGTTTATGA

Predicted protein sequences of Glyma01g01210

Limit To All Plant Sequences

>Glyma01g01210.2   sequence type=predicted peptide   gene model=Glyma01g01210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAENHNHRDLLILPPSVEALIESICRDQNRPPLDYSTRHRLKLQGEEQSLRILNKIAATRIRLSFAGFVNHMLDDINHQNNNNNNNNNNNNNNNNNSHSQPEPSTRQQTSPTRPPRPTPSSLLHALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDLPMAKFEKTIWEDFGEKCIYDQSDRQLHRDWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAEDGSGKNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYFVRMQSGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDLTTVSVQKIPDEYCKDANGNIMVDNEKPRILTDGTGFISRDLALLCPNNVYKGSNLENNCIQEINNLVELEDMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVEKDPSVHMQSINSLEVVTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPFLKHHLSRFAREEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQLLQYFRKGDPWIENSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRLLTLNNCTNENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELFPHYMEKDKSFTSTSILGLIYDEVEIWLENDMVGEIWKLPCFDVEVPPSCLEKWKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRLYIIKQNEKALNCDPSVVREIFRL*

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