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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19930 | AT | Annotation by Michelle Graham. TAIR10: RNA-dependent RNA polymerase family protein | chr2:8607533-8612441 REVERSE LENGTH=977 | SoyBase | E_val: 0 | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003968 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| KOG0988 | KOG | RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference | JGI | ISS | |
| PTHR23079 | Panther | RNA-DEPENDENT RNA POLYMERASE | JGI | ISS | |
| PF05183 | PFAM | RNA dependent RNA polymerase | JGI | ISS | |
| UniRef100_D7L6F2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA-dependent RNA polymerase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L6F2_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336CB8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336CB8 related cluster n=1 Tax=unknown RepID=UPI0002336CB8 | SoyBase | E_val: 0 | ISS |
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Glyma01g01210 not represented in the dataset |
Glyma01g01210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g008700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g01210.2 sequence type=CDS gene model=Glyma01g01210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAAAATCACAACCACCGTGACCTGCTTATTCTTCCGCCCTCGGTGGAGGCTCTGATCGAGAGCATCTGCCGCGACCAGAACCGGCCTCCGCTCGATTACAGCACCCGCCACCGTCTCAAACTACAGGGCGAGGAACAATCCCTTCGCATTCTCAACAAAATCGCCGCCACCCGTATCCGATTATCTTTCGCAGGCTTCGTCAACCACATGCTCGACGACATCAACCACCAAAACAATAATAATAATAACAACAACAACAACAATAACAACAATAATAACAATTCTCACTCTCAACCTGAGCCCTCCACGCGACAACAAACCTCTCCCACGCGCCCTCCCCGACCCACGCCCTCCTCGCTATTGCACGCGCTCGGAGAATTGGAGTTCCGAAAAGCCTTTCTCATTCTCAGTTACATCGGACGAGAGAGTCTTGAGAATTGTATTACTGATGCTAAAATTAGAAGCCTCAAAGACTTGCCGATGGCAAAGTTCGAGAAAACAATATGGGAAGATTTTGGGGAAAAATGCATCTACGATCAAAGTGATCGCCAATTGCATCGTGACTGGAATTCTGGCCGCACACATGTATATCAATGTTTTGTTTTTCCAGATGGGAACTTAAGGTTCAAGGGCCCTATATTACAAAGCACGCGAACACATTTGCAGAAAACTCTCGGTGATGACAATGTTTTGCTAGTTAAATTTGCTGAGGATGGGAGTGGAAAGAATTTTAGGACCCATGCTGAAGAAGCAAATGCCCTCTATGGAAAGTTTGGAAAAGAAGGGATTCGTGTTGGTCTGCGTTTGTATCGCTTTTTTGTTTTTAAAGATGGTGGAAACGAAGAGAAGCAGAAGGACCCAACAAGTTCCACTGTGAAGTGTTATTTTGTTAGGATGCAATCAGGTTGTTCTGCAGATGAGGGTGCTGATTACATTTTGTCTAACAAGACAGTGTCTGAAGCAAGAACTTTATTCATGCATGCTCACATGTTGTTGCCCAATTTGAACAAGTATATGGCTAGGTTCTCTCTCATTCTGTCAAAGACCTTGAAACTCAACATTGACTTGACAACTGTGAGTGTCCAAAAAATACCAGATGAATATTGCAAGGATGCAAATGGCAATATTATGGTTGATAATGAGAAACCACGTATTCTCACGGATGGAACTGGCTTCATCTCTAGAGATTTGGCGTTGCTCTGCCCCAACAATGTTTACAAAGGAAGCAACTTGGAGAACAACTGTATTCAGGAAATTAACAATCTTGTTGAACTTGAGGATATGAGTAATGCAATGGGAGAAGCAGAGCAGCTGAGCACACATGAACCGCCTTTGCTGATTCAGTGCCGTCTCTTTCACATGGGTCATGCAATTAAGGGTACTCTTTTGGTTAACAGAAAGCTTCCTCCTAGGACAATACAGGTTCGACCTTCAATGATTAAAGTTGAGAAAGACCCAAGTGTGCATATGCAAAGCATAAATTCATTGGAGGTAGTAACCACAAGCAACAAGCCAAAGAGAGGATATTTATCTAAACATCTGATTGCACTTCTGAGCTTTGGAGGAGTTCCAAATGAATTCTTCATGGATTTACTTCGGAGTAACATGGAAGATGCAAACCATGTCTACTCCAACAAGCGTTCTGCACTCAGAGCATCCATCAACTGTGGCGAGAAGGATGAATACAATGCAGCAGAAATGATTTTATGTGGCATTCCTTTGGATGAGCCATTTTTGAAGCATCATCTCTCTAGATTTGCGAGGGAGGAAAAAAAGAAACTTAGAGGAGGGAAGCTTTATATGCCTGATTGTTTCTATTTAATGGGGACTGTAGATCCCACTGGACACTTAAAAAAGAATCAAGTTTGTATTATTCATGAGAATAGCCAAATTGTTGGGGATGTTCTGGTTTATAGAAATCCTGGTTTACATTTCGGAGACATTCACAAAATGGATGCCACATATGTGAAGGAGTTAGAGTCATATGTTGGACATAGCAAGTATGGAATTTTTTTCCCACGTGTTGGAACTCGCTCTGTGGCAGATGAGATTGCTGGAGGTGATTTTGATGGTGACACATACTGGGTTTCTAACCATCCTCAGCTATTACAATATTTCAGAAAGGGTGACCCTTGGATCGAAAATTCGGTTCCATTGGATTCTAGTGTTAAAAAGCCAAGTGAATTTTCTCCCGAGGAACTCGAGGAAGAACTTTTTAGACTATTCCTCAAAACTCGGTTTCAACCAAGTTACGCAATGGGCATGTCAGAAAATAGCTGGATGGCACTCATGGATCGTCTTTTGACACTAAATAACTGCACTAATGAGAATGAGAAGGAACGTGTGAAAGAAAATATGCTCAAATTGATTGATATATACTATGAGGCATTAGATGCTCCTAAAAGTGGAAGAAAGGTCCAAGTTCCAAATGATTTAATTGCAGAATTGTTCCCGCACTATATGGAAAAGGATAAATCATTCACTTCAACCTCTATCTTAGGTTTAATTTATGATGAAGTTGAAATCTGGCTAGAAAACGACATGGTAGGAGAAATTTGGAAACTCCCTTGTTTTGATGTTGAAGTACCTCCCAGCTGTTTGGAAAAGTGGAAAACAAAATACGAAGAATATAGGAAGGATATGACTGATGCCTTGAACTTGAAGGACAAATCTAAATCCCACGAAGAGGCAGCTGAAGTCAATAGAAAATATAAGGAGGAATTCTATGGTCCAACTCTTGAGATGGAGGGTTGTCTGAAGAGTATTGGTGATATTTTTAACGAGGCTCTGGCTGTGTATAACGTTAGTTATGAATACGCCATGCTAAAGAAAGAAGTCAAAAGATGTGGCTTTGCATGGAAGATTGCAGGTTCAGCTTTGACTAGGCTTTATATCATAAAACAAAATGAGAAGGCTCTGAATTGTGATCCATCTGTAGTGCGTGAGATTTTTCGTTTATGA
>Glyma01g01210.2 sequence type=predicted peptide gene model=Glyma01g01210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAENHNHRDLLILPPSVEALIESICRDQNRPPLDYSTRHRLKLQGEEQSLRILNKIAATRIRLSFAGFVNHMLDDINHQNNNNNNNNNNNNNNNNNSHSQPEPSTRQQTSPTRPPRPTPSSLLHALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDLPMAKFEKTIWEDFGEKCIYDQSDRQLHRDWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAEDGSGKNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYFVRMQSGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDLTTVSVQKIPDEYCKDANGNIMVDNEKPRILTDGTGFISRDLALLCPNNVYKGSNLENNCIQEINNLVELEDMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVEKDPSVHMQSINSLEVVTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPFLKHHLSRFAREEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQLLQYFRKGDPWIENSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRLLTLNNCTNENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELFPHYMEKDKSFTSTSILGLIYDEVEIWLENDMVGEIWKLPCFDVEVPPSCLEKWKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRLYIIKQNEKALNCDPSVVREIFRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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