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Report for Sequence Feature Glyma01g01165

Feature Type:gene_model
Chromosome:Gm01
Start:813196
stop:815449
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g01165
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16360AT Annotation by Michelle Graham. TAIR10: HPT phosphotransmitter 4 | chr3:5554351-5555518 FORWARD LENGTH=145 SoyBaseE_val: 3.00E-21ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0080036GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0009927GO-mf Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG4747 KOG Two-component phosphorelay intermediate involved in MAP kinase cascade regulation JGI ISS
PF01627PFAM Hpt domain JGI ISS
UniRef100_B9NEJ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histidine phosphotransfer protein n=1 Tax=Populus trichocarpa RepID=B9NEJ3_POPTR SoyBaseE_val: 1.00E-22ISS
UniRef100_B9NEJ3UniRef Annotation by Michelle Graham. Best UniRef hit: Histidine phosphotransfer protein n=1 Tax=Populus trichocarpa RepID=B9NEJ3_POPTR SoyBaseE_val: 1.00E-22ISS

Expression Patterns of Glyma01g01165
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g01165 not represented in the dataset
Glyma01g01165 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g01165 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g008300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g01165
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g01165
>Glyma01g01165.1   sequence type=CDS   gene model=Glyma01g01165   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGTTCCGATGAGATGCACAGCAAAATTATAACGATGAAACAATCTTTCTTCGATGAGGGATTTCTGATTCCAACCCAGTTTCAAGAGCTGGAGCTGCTACAAGACAGAGACAATATGAACTTTGTTAGGGATGTTTTTTGTTTGTTCTTCACGGATATGACTAGACAGTTTTCTGAGATTGAGCAAATTCTTCGAGAAGAAATTGATGGTCAGCCAAGGGAAGACATGAATAGGTTACTTCAACGACTCAAGGGAAGTGTGTTAAGCATTGGTGCTCTCAAGATTTTGAACGGAGTCAATAAGATGATACAACTTTTCGAAGAAGGCAACTTGGAAAGGATCATGGCTGCTTTTGAACAGGTGAAGATGGAGAGTGTAAATCTTAGGGCGAAAGTTGAGCCTTACTTTCAGTTGCTGGAGTCCCAAGCTGAATCATTTACAGAGTCCCAAGCTCCCAAATGA
Predicted protein sequences of Glyma01g01165
>Glyma01g01165.1   sequence type=predicted peptide   gene model=Glyma01g01165   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSDEMHSKIITMKQSFFDEGFLIPTQFQELELLQDRDNMNFVRDVFCLFFTDMTRQFSEIEQILREEIDGQPREDMNRLLQRLKGSVLSIGALKILNGVNKMIQLFEEGNLERIMAAFEQVKMESVNLRAKVEPYFQLLESQAESFTESQAPK*






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