Glyma01g01110 - SoyBase

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Report for Sequence Feature Glyma01g01110

Feature Type:	gene_model
Chromosome:	Gm01
Start:	757752
stop:	761280
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g01110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37410	AT	Annotation by Michelle Graham. TAIR10: translocase inner membrane subunit 17-2 \| chr2:15698119-15698850 REVERSE LENGTH=243	SoyBase	E_val: 9.00E-95	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0045039	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005741	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial outer membrane	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0005744	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex	SoyBase	N/A	ISS
GO:0015450	GO-mf	Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	SoyBase	N/A	ISS
KOG1652	KOG	Mitochondrial import inner membrane translocase, subunit TIM17	JGI		ISS
PTHR10485	Panther	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM17	JGI		ISS
PF02466	PFAM	Tim17/Tim22/Tim23 family	JGI		ISS
UniRef100_B9RKH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit tim17, putative n=1 Tax=Ricinus communis RepID=B9RKH3_RICCO	SoyBase	E_val: 1.00E-98	ISS
UniRef100_I1J4I7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4I7_SOYBN	SoyBase	E_val: 3.00E-142	ISS

Expression Patterns of Glyma01g01110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g01110 not represented in the dataset	Glyma01g01110 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g01110

Paralog	Evidence	Comments
Glyma16g08520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g01110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g007700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g01110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g01110

Limit To All Plant Sequences

>Glyma01g01110.1   sequence type=CDS   gene model=Glyma01g01110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACACCCGAGACATCGCGCGAACCCTGCCCCGATCGCATCCTCGACGACATAGGCGGCGCCTTCGGCATGGGAGCGGTGGGTGGCTCCGCCTTCCATTTTCTCAAGGGTCTCTACAATTCCCCCAAGGGCGATCGCTTCGTCGGCGCCACCCAGGCCGTGCGCCTCAACGCCCCCCGCGTCGGCGGCAGCTTCGCCGTCTGGGGCGGCCTCTTCTCCGCCTTCGACTGCACCATGGTCTACGCGCGCCAGAAGGAGGACCCCTGGAACTCCATCGTCGCCGGCGCCGCCACCGGCGGCTTCCTCTCCATGCGCCAGGGCCTCGGCGCCTCCGCCCGCTCCGCGGCCTTCGGCGGCGTCCTCCTCGCTCTCATCGAGGGCGCCGGGATCATGCTCAACAAGTTCCTCAGCGCGCAGCAGCCCATGCCTATGATCATGGACGAGCTGCCGCCGCAGTCGTCGACCGAGCAGTCGTGGCTCGGAGGGTGGTTCGGTGGAGGGAACAAAGAGGAGACTGCCACCACCGCCGGCTCCGGAAGCGAGACGAAGATTCTGGAGAGTTTTGATGCGCCCCCTGTGCCCAATTTTGAGTATAAGTAA

Predicted protein sequences of Glyma01g01110

Limit To All Plant Sequences

>Glyma01g01110.1   sequence type=predicted peptide   gene model=Glyma01g01110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGLYNSPKGDRFVGATQAVRLNAPRVGGSFAVWGGLFSAFDCTMVYARQKEDPWNSIVAGAATGGFLSMRQGLGASARSAAFGGVLLALIEGAGIMLNKFLSAQQPMPMIMDELPPQSSTEQSWLGGWFGGGNKEETATTAGSGSETKILESFDAPPVPNFEYK*

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