SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19740 | AT | Annotation by Michelle Graham. TAIR10: Peptidase M28 family protein | chr5:6673986-6676767 FORWARD LENGTH=681 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0008233 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase activity | SoyBase | N/A | ISS |
| GO:0016805 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dipeptidase activity | SoyBase | N/A | ISS |
| KOG2195 | KOG | Transferrin receptor and related proteins containing the protease-associated (PA) domain | JGI | ISS | |
| PTHR10404 | Panther | GLUTAMATE CARBOXYPEPTIDASE | JGI | ISS | |
| PF02225 | PFAM | PA domain | JGI | ISS | |
| PF04253 | PFAM | Transferrin receptor-like dimerisation domain | JGI | ISS | |
| PF04389 | PFAM | Peptidase family M28 | JGI | ISS | |
| UniRef100_D7LZB3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidase M28 family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LZB3_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J4H3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4H3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g01000 not represented in the dataset |
Glyma01g01000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g006700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g01000.2 sequence type=transcript gene model=Glyma01g01000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATCATGATTCACACAAAAAAAATAAGATGCTCTAATAAGAATGGCCAATACACTTTCATATCCTCATTATCTTTGACTTTGATTAAACCACCCCAATGCTCCTCGATTTGATACACTCCTTAAACTTACTTACCAACCAAAGTAAGAGTTTAGACCAAGTTTGGCTATCAATCAGTGCTACCTTATATTACAAAACCAATCACAACACGACAACATCTCTTTCTCACACACCAGAGAAGCCAATTAAGTGTTCAATATTAAGTGCCTCAAACATCAAAGAAACAAAAAAGAAAGGCATAGAATTGAATTCCAGAGAGAGTCATGAAAACAAGCACTACTACAACTACAACCATATTAGCCATAGCCACCTCTTACTTGTTTCTTCTGATCACGCCAACCCAAAAATCCACGTACCACTCTCTCTTCATATCCGATTCCCTATCAGACAATGCCTCCATATACAACCACCTTAAAACTCTCACCCGCAGACCCCATGTCGCAGGTTCCAAAGCCAACGCTGAAGCTGCCTCATACGTTGTCTCAGTCTTCACCTCCTCATACATACCATCACACATAGTTTCCTACGAGGTTTCTCTCACGTACCCTTTGTCACGTTCGTTGGTTCTAATAACGAACCCTTCTACAACCTTCACTCTCCACCAAGAAACCTACGAGGGTGATCCTTATGCTGACGTGGCAGATGAGGTTGTCCCCACTTTCCACGCGTATGCCAAGTCAGGCACTGTGGCTGCTCCTGTGTGTTATGTGAACTATGGAAGAGTGGAGGACTATTTGACTCTGAAGGATAAAAATGGTGTGAATGTTTCAGGCACTGTTGTGTTGGCAAGGCATGGGAAGATATATAGAGGGGACATTGTGAAGAATGCTTATGAGGAAGGTGCTGTTGGGGTGGTGATATATTCAGATAGGAAGGACTATGGTGGTGAGGAAAAGTGGTTTCCTGATGAGAAGTGGTTGCCACCAAGTGGGGTTCAGGTGGGGACAGTGTATGGTGGGTTAGGGGACCCCACAACTCCTGGTTGGGCAAGTAGTAGTAGTGGTGATGGAGAGTGTGAGAGGTTGAACAAGGATGAGGTGGAGAAGGGAGGTGATGTTCCTCTCATACCTTCATTGCCTGTGTCAGCTGCTGATGGGGAGAAGATAATGAGGTCAATTGGTGGACCAGTTGCTGAGGATGATTGGCAGGGAAGCAAGGATGCCCCTATTTACAGGCTTGGACCAGGACCAGGAATTCTCAACCTTAGTTACAAGGGGCAGGATGTTATAGCCACAATTCAAAATGTTATTGGTGTGATTGAAGGGGCAGAAGAGCCTGACCGATTTGTCATACTAGGTAACCATAGGGATGCATGGACATTTGGAGCGGTTGATCCCAATAGTGGCACTGCAGCACTGCTTGAGGTGGCTCAAAGGCTAGGGAAGCTTCAGAAAAAAGGGTGGAGACCTAGAAGAACAATTTTATTATGTAATTGGGATGCTGAGGAATATGGCCTTATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAATTCTTGCTTCAAAGGCAGTTGCTTACTTGAATGCTGATTGTGTAGTAGGTGGACCAGGGTTCAATGTCCGTGCCACTCCACAGTTAGATGAATTGATCAAAAGAGCAACTCAGGAGGTCAAAGACCCTGATAACTCATCACAGAGCATTTATGAATCTTGGACTAGTTCTGGTAGTTCTCCTCTGTTTGGGAGGTTAGGAGGTGGAGGATCAGACTATGCATCTTTCTTGCAGCATGTGGGAATCCCGGCTGCTGACATAGCCTTTGGAGGAGATGTTGCAGGATACCCGGTATACCACTCACTCTATGATGACTTCGTCTGGATGGAAAAATTCGGCGATCCTATGTTTCAAAGGCATGTTGCAGCTGCAAGTGTTTGGGGTCTGGTAGCACTTTGGTTAGCAGATGAGGAATTCCTACCTTTTGATTATCTATCTTATGCCAAGGAGCTCCAGGTGTGCCTACAATTCATTAGATGGTGATTTAATGTAATTTTTTTCAAAGACTGTGCTCACTGAATTTGAGAGAATGAAAGATACTTTACAACACCAAATATTTAAATCACAGCTTAGCGTGGAGAATCTGGAGGATGAGATTTCAAATAAAGACATAAATTTGTCACCTATATTCAAGTCCATCAAGGGGCTTGAGAAAGCAGCAATCAAGATAGATAGCCAGAGAAAGGAAATAGAAGCTGGTAAAGGTTGGATAACAGGGAAGAAGGACCACTTGAGAGTGAGAGAGCTGAATGATAGATTGATGATGGCTGAGCGTGCATTCACTGACAGAGATGGCCTCTTTGGAATGTCATGGTATAAGCATTTGATTTATGGACCATCAAAACATAATGACTACGGCTCTCAATCTTTCCCTGGAATCGATGATGCTGTTAAAATGGCCAAAAATCTACATACTGCAGAATCGTGGCATCGTGTACAGCACGAAGTTTGGAGAGTCTCAAGAGTCATCAAACAAGCCTCGCTAGTTTTATTCGGTCTACTATCATGAATATCAATTTAGTTGTATATTTCGATTCATGGTAAATTATATCTCCGTAAGAATAAATATGTATATATGTGTGATGATTCATAAATCTCAATAACTCAAGAAGAGATTTAGGATTTTGTTTTTCCCCGCTTCTCTCATCTGTCAAATTCACTTCGCAATTCGAATAACAAGTTGCAAAATATATTTTTTTCATGCATGGTACAGAGGCTGCCATAGTTCTGTAATAAGAAGCCAACACGTAAATCCCTGATCCGAATTAGATCGTTTTTATTGTGTTTGTAAATATTACGTTTCTTTATGAACCTTGTCATGAAATGTCCCTATCATCACTTTTGCACAA
>Glyma01g01000.1 sequence type=CDS gene model=Glyma01g01000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAACAAGCACTACTACAACTACAACCATATTAGCCATAGCCACCTCTTACTTGTTTCTTCTGATCACGCCAACCCAAAAATCCACGTACCACTCTCTCTTCATATCCGATTCCCTATCAGACAATGCCTCCATATACAACCACCTTAAAACTCTCACCCGCAGACCCCATGTCGCAGGTTCCAAAGCCAACGCTGAAGCTGCCTCATACGTTGTCTCAGTCTTCACCTCCTCATACATACCATCACACATAGTTTCCTACGAGGTTTCTCTCACGTACCCTTTGTCACGTTCGTTGGTTCTAATAACGAACCCTTCTACAACCTTCACTCTCCACCAAGAAACCTACGAGGGTGATCCTTATGCTGACGTGGCAGATGAGGTTGTCCCCACTTTCCACGCGTATGCCAAGTCAGGCACTGTGGCTGCTCCTGTGTGTTATGTGAACTATGGAAGAGTGGAGGACTATTTGACTCTGAAGGATAAAAATGGTGTGAATGTTTCAGGCACTGTTGTGTTGGCAAGGCATGGGAAGATATATAGAGGGGACATTGTGAAGAATGCTTATGAGGAAGGTGCTGTTGGGGTGGTGATATATTCAGATAGGAAGGACTATGGTGGTGAGGAAAAGTGGTTTCCTGATGAGAAGTGGTTGCCACCAAGTGGGGTTCAGGTGGGGACAGTGTATGGTGGGTTAGGGGACCCCACAACTCCTGGTTGGGCAAGTAGTAGTAGTGGTGATGGAGAGTGTGAGAGGTTGAACAAGGATGAGGTGGAGAAGGGAGGTGATGTTCCTCTCATACCTTCATTGCCTGTGTCAGCTGCTGATGGGGAGAAGATAATGAGGTCAATTGGTGGACCAGTTGCTGAGGATGATTGGCAGGGAAGCAAGGATGCCCCTATTTACAGGCTTGGACCAGGACCAGGAATTCTCAACCTTAGTTACAAGGGGCAGGATGTTATAGCCACAATTCAAAATGTTATTGGTGTGATTGAAGGGGCAGAAGAGCCTGACCGATTTGTCATACTAGGTAACCATAGGGATGCATGGACATTTGGAGCGGTTGATCCCAATAGTGGCACTGCAGCACTGCTTGAGGTGGCTCAAAGGCTAGGGAAGCTTCAGAAAAAAGGGTGGAGACCTAGAAGAACAATTTTATTATGTAATTGGGATGCTGAGGAATATGGCCTTATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAATTCTTGCTTCAAAGGCAGTTGCTTACTTGAATGCTGATTGTGTAGTAGGTGGACCAGGGTTCAATGTCCGTGCCACTCCACAGTTAGATGAATTGATCAAAAGAGCAACTCAGGAGGTCAAAGACCCTGATAACTCATCACAGAGCATTTATGAATCTTGGACTAGTTCTGGTAGTTCTCCTCTGTTTGGGAGGTTAGGAGGTGGAGGATCAGACTATGCATCTTTCTTGCAGCATGTGGGAATCCCGGCTGCTGACATAGCCTTTGGAGGAGATGTTGCAGGATACCCGGTATACCACTCACTCTATGATGACTTCGTCTGGATGGAAAAATTCGGCGATCCTATGTTTCAAAGGCATGTTGCAGCTGCAAGTGTTTGGGGTCTGGTAGCACTTTGGTTAGCAGATGAGGAATTCCTACCTTTTGATTATCTATCTTATGCCAAGGAGCTCCAGCTTAGCGTGGAGAATCTGGAGGATGAGATTTCAAATAAAGACATAAATTTGTCACCTATATTCAAGTCCATCAAGGGGCTTGAGAAAGCAGCAATCAAGATAGATAGCCAGAGAAAGGAAATAGAAGCTGGTAAAGGTTGGATAACAGGGAAGAAGGACCACTTGAGAGTGAGAGAGCTGAATGATAGATTGATGATGGCTGAGCGTGCATTCACTGACAGAGATGGCCTCTTTGGAATGTCATGGTATAAGCATTTGATTTATGGACCATCAAAACATAATGACTACGGCTCTCAATCTTTCCCTGGAATCGATGATGCTGTTAAAATGGCCAAAAATCTACATACTGCAGAATCGTGGCATCGTGTACAGCACGAAGTTTGGAGAGTCTCAAGAGTCATCAAACAAGCCTCGCTAGTTTTATTCGGTCTACTATCATGA >Glyma01g01000.2 sequence type=CDS gene model=Glyma01g01000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAACAAGCACTACTACAACTACAACCATATTAGCCATAGCCACCTCTTACTTGTTTCTTCTGATCACGCCAACCCAAAAATCCACGTACCACTCTCTCTTCATATCCGATTCCCTATCAGACAATGCCTCCATATACAACCACCTTAAAACTCTCACCCGCAGACCCCATGTCGCAGGTTCCAAAGCCAACGCTGAAGCTGCCTCATACGTTGTCTCAGTCTTCACCTCCTCATACATACCATCACACATAGTTTCCTACGAGGTTTCTCTCACGTACCCTTTGTCACGTTCGTTGGTTCTAATAACGAACCCTTCTACAACCTTCACTCTCCACCAAGAAACCTACGAGGGTGATCCTTATGCTGACGTGGCAGATGAGGTTGTCCCCACTTTCCACGCGTATGCCAAGTCAGGCACTGTGGCTGCTCCTGTGTGTTATGTGAACTATGGAAGAGTGGAGGACTATTTGACTCTGAAGGATAAAAATGGTGTGAATGTTTCAGGCACTGTTGTGTTGGCAAGGCATGGGAAGATATATAGAGGGGACATTGTGAAGAATGCTTATGAGGAAGGTGCTGTTGGGGTGGTGATATATTCAGATAGGAAGGACTATGGTGGTGAGGAAAAGTGGTTTCCTGATGAGAAGTGGTTGCCACCAAGTGGGGTTCAGGTGGGGACAGTGTATGGTGGGTTAGGGGACCCCACAACTCCTGGTTGGGCAAGTAGTAGTAGTGGTGATGGAGAGTGTGAGAGGTTGAACAAGGATGAGGTGGAGAAGGGAGGTGATGTTCCTCTCATACCTTCATTGCCTGTGTCAGCTGCTGATGGGGAGAAGATAATGAGGTCAATTGGTGGACCAGTTGCTGAGGATGATTGGCAGGGAAGCAAGGATGCCCCTATTTACAGGCTTGGACCAGGACCAGGAATTCTCAACCTTAGTTACAAGGGGCAGGATGTTATAGCCACAATTCAAAATGTTATTGGTGTGATTGAAGGGGCAGAAGAGCCTGACCGATTTGTCATACTAGGTAACCATAGGGATGCATGGACATTTGGAGCGGTTGATCCCAATAGTGGCACTGCAGCACTGCTTGAGGTGGCTCAAAGGCTAGGGAAGCTTCAGAAAAAAGGGTGGAGACCTAGAAGAACAATTTTATTATGTAATTGGGATGCTGAGGAATATGGCCTTATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAATTCTTGCTTCAAAGGCAGTTGCTTACTTGAATGCTGATTGTGTAGTAGGTGGACCAGGGTTCAATGTCCGTGCCACTCCACAGTTAGATGAATTGATCAAAAGAGCAACTCAGGAGGTCAAAGACCCTGATAACTCATCACAGAGCATTTATGAATCTTGGACTAGTTCTGGTAGTTCTCCTCTGTTTGGGAGGTTAGGAGGTGGAGGATCAGACTATGCATCTTTCTTGCAGCATGTGGGAATCCCGGCTGCTGACATAGCCTTTGGAGGAGATGTTGCAGGATACCCGGTATACCACTCACTCTATGATGACTTCGTCTGGATGGAAAAATTCGGCGATCCTATGTTTCAAAGGCATGTTGCAGCTGCAAGTGTTTGGGGTCTGGTAGCACTTTGGTTAGCAGATGAGGAATTCCTACCTTTTGATTATCTATCTTATGCCAAGGAGCTCCAGGTGTGCCTACAATTCATTAGATGGTGA
>Glyma01g01000.1 sequence type=predicted peptide gene model=Glyma01g01000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTSTTTTTTILAIATSYLFLLITPTQKSTYHSLFISDSLSDNASIYNHLKTLTRRPHVAGSKANAEAASYVVSVFTSSYIPSHIVSYEVSLTYPLSRSLVLITNPSTTFTLHQETYEGDPYADVADEVVPTFHAYAKSGTVAAPVCYVNYGRVEDYLTLKDKNGVNVSGTVVLARHGKIYRGDIVKNAYEEGAVGVVIYSDRKDYGGEEKWFPDEKWLPPSGVQVGTVYGGLGDPTTPGWASSSSGDGECERLNKDEVEKGGDVPLIPSLPVSAADGEKIMRSIGGPVAEDDWQGSKDAPIYRLGPGPGILNLSYKGQDVIATIQNVIGVIEGAEEPDRFVILGNHRDAWTFGAVDPNSGTAALLEVAQRLGKLQKKGWRPRRTILLCNWDAEEYGLIGSTEWVEENREILASKAVAYLNADCVVGGPGFNVRATPQLDELIKRATQEVKDPDNSSQSIYESWTSSGSSPLFGRLGGGGSDYASFLQHVGIPAADIAFGGDVAGYPVYHSLYDDFVWMEKFGDPMFQRHVAAASVWGLVALWLADEEFLPFDYLSYAKELQLSVENLEDEISNKDINLSPIFKSIKGLEKAAIKIDSQRKEIEAGKGWITGKKDHLRVRELNDRLMMAERAFTDRDGLFGMSWYKHLIYGPSKHNDYGSQSFPGIDDAVKMAKNLHTAESWHRVQHEVWRVSRVIKQASLVLFGLLS* >Glyma01g01000.2 sequence type=predicted peptide gene model=Glyma01g01000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTSTTTTTTILAIATSYLFLLITPTQKSTYHSLFISDSLSDNASIYNHLKTLTRRPHVAGSKANAEAASYVVSVFTSSYIPSHIVSYEVSLTYPLSRSLVLITNPSTTFTLHQETYEGDPYADVADEVVPTFHAYAKSGTVAAPVCYVNYGRVEDYLTLKDKNGVNVSGTVVLARHGKIYRGDIVKNAYEEGAVGVVIYSDRKDYGGEEKWFPDEKWLPPSGVQVGTVYGGLGDPTTPGWASSSSGDGECERLNKDEVEKGGDVPLIPSLPVSAADGEKIMRSIGGPVAEDDWQGSKDAPIYRLGPGPGILNLSYKGQDVIATIQNVIGVIEGAEEPDRFVILGNHRDAWTFGAVDPNSGTAALLEVAQRLGKLQKKGWRPRRTILLCNWDAEEYGLIGSTEWVEENREILASKAVAYLNADCVVGGPGFNVRATPQLDELIKRATQEVKDPDNSSQSIYESWTSSGSSPLFGRLGGGGSDYASFLQHVGIPAADIAFGGDVAGYPVYHSLYDDFVWMEKFGDPMFQRHVAAASVWGLVALWLADEEFLPFDYLSYAKELQVCLQFIRW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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