SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G45140 | AT | Annotation by Michelle Graham. TAIR10: nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161 | SoyBase | E_val: 0 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| GO:0032549 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonucleoside binding | SoyBase | N/A | ISS |
| KOG0215 | KOG | RNA polymerase III, second largest subunit | JGI | ISS | |
| PTHR20856 | Panther | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 | JGI | ISS | |
| PTHR20856:SF8 | Panther | DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 | JGI | ISS | |
| PF00562 | PFAM | RNA polymerase Rpb2, domain 6 | JGI | ISS | |
| PF04560 | PFAM | RNA polymerase Rpb2, domain 7 | JGI | ISS | |
| PF04561 | PFAM | RNA polymerase Rpb2, domain 2 | JGI | ISS | |
| PF04563 | PFAM | RNA polymerase beta subunit | JGI | ISS | |
| PF04565 | PFAM | RNA polymerase Rpb2, domain 3 | JGI | ISS | |
| PF04566 | PFAM | RNA polymerase Rpb2, domain 4 | JGI | ISS | |
| PF04567 | PFAM | RNA polymerase Rpb2, domain 5 | JGI | ISS | |
| UniRef100_B9IDF9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase (Fragment) n=4 Tax=core eudicotyledons RepID=B9IDF9_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336E99 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336E99 related cluster n=1 Tax=unknown RepID=UPI0002336E99 | SoyBase | E_val: 0 | ISS |
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Glyma01g00975 not represented in the dataset |
Glyma01g00975 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g14995 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g006500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g00975.1 sequence type=CDS gene model=Glyma01g00975 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCTCAAGCACGATCCTTTGCAACAACCCACCACCAATCAGTTCAATGGGGGCAACAAGTTACCTGGTGACCATTGTGGTGATTCTGGTTTTGACCAAAGGGTCCTAACTGCTCCCATAAAATCTGCTGTTGACAAGTTCCAGCTTATTCCTGAGTTCCTCAAGGTTAGGGGATTGGTGAAGCAACATTTGGATTCCTTTAACTATTTTGTGAGGACAGATATAAAGAAAATCGTTCGTGCTAACAATCTTATCATGGCGAGTAGGTACCCACACATATATCTAAGGTTTTTAAATGTCGGAATTGGTAAACCATCCATGATGATTGATGAGGTTACTGAGGGCCTTACTCCACAAACGTGCCGCTTAAGTGACCTGACGTATGCGGCTCCAATATGTGCTGATGTTGAGTACACGCTACGAAGTCACGATAAACCAGACAACAAGAGAACGCTCAGAGTTGAAATTGGAAGAATGCCTATTATGCTGCGGAGTTGTTGTTGTGTCTTGCATGGGAAAGATGAAGCTGAACTTGCTAAACTTGGTGAGTGCCCCCTTGATCCCGGAGGATATTTTGTAATCAAAGGGACTGAGAAGGTGATTTTGATACAAGAACAACTGTCAAAGAATAGAATAATTATAGACACCGACAAGAAAGGAAACATTACTGCATCTGTTACAAGCAGCACGGAGAAAATAAAAACAAAAACTGTTATTGTGATGGAAAATGAGAAGCTCTGGTTACAATTGAATAAATTTCCTAAGAAGGTTCCTCTTATGGTAGTTATGAAAGCTATGGGGATGGAGAGTGATCAAGAAGTTATACAGATGGTTGGAAGAGATCCTCGTTATAGTTTTCTACTGTTGCCCTCTATTGAGGAATGTAGAAAATGTAAGGTATATACAAAAGAGCAAGCATTGGAGTACCTTGATAAGCTGGTAAAACGTCCCACTTATTCAAGCAATTCAGCTGAAAAGGAAGGAGCAGCATTTTCTGCCCTAAGAGATGTATTTCTTGCAAATGTGCCTGTGGATCAAGATAATTTTCAGAAAAAATGTATATATGTTGCTGTTATGATGAGACGCATAATGGATGCAATTTTAAATAAAGATGCAATGGATGACAAGGATTATGTGGGAAACAAGCGGTTGGAGTTATCTGGCCAGTTAATATCTCTGCTTTTTGAGGATCTCTTTAAGTCAATGACAACCGAAGTTAAGAACTTGACAGACAAAATGTTAGATAAGCCGGACAAGGCTAAGAATTTTGACATATGTACTCTTCTTACTAGGACTCGGAGTATCATCACTCTAGGTCTGGAAAGGACTCTCTCCACTGGTAATTTTGAAATTAAAAGGTTCAGAATGGAAAGGAAAGGAATGACACAGGTGTTACAAAGGTTATCATTTATTGGTGCTTTGGGCCACATGACAAGAGTCTCACCACAGTTTGAGAAGTCCAGGAAAGTAAGTGGACCTAGAGCTTTGCAGCCTAGCCAGTGGGGCATGCTTTGTCCTTGTGATACCCCTGAAGGTGAGTCTTGTGGACTAGTAAAGAACTTGGCTTTGATGACTCATGTTACTACTGATGAAGAGGAGAAGCCCTTGATTTCTCTGTTCTATTCTTTGGATGTTGCACGCATAGAACACCTCTTTGCAGAGGAGCTTCATACACCGGATTCCTTTCTTGTCATTTTTAATGGTTTAATCCTTGGCAAGCATAGGAGGCCACTGCATTTTGCTACTAGAATTAGAAAGTTGCGGAGAGCAGGTGAAATTGGTGAGTTTGTGTCTGTCTATGTCAATGAAAAGCAGCATTGTGTCTACTTAGCTTCTGATGGTGGTAGAGTTTGCCGTCCCCTGGTCATTGCTGACAAGGGAATATCAAGAATCAAACAGCATCATATGAAAGAATTAATGGATGGAGTATGCACATTTGATGATTTTTTACGAGATGGCTTGCTTGAGTATCTTGATGTTAATGAAGAAAACAATGCTTTGATTGCTTTATATGAAGGAGATGCCACATCAGAAACTACTCATATTGAGATTGAGCCTTTTACCATCTTGGGAGTTATTGCAGGGTTAATTCCATATCCTCATCATAATCAGTCACCTAGAAACACGTATCAGTGTGCCATGGGTAAGCAAGCTATGGGAAATATAGCATTTAACCAGCTGCGCCGGATGGACAGTTTGCTTTACCTACTGGTTTATCCTCAACGACCTTTGCTTACAACTAAGACAATTGAGCTGGTTGGATATGATAAGCTTGGAGCCGGTCAAAATGCCACAGTAGCTGTAATGAGCTATAGTGGTTATGATATAGAAGATGCCATTGTGATGAACAAGGCATCTCTTGATCGTGGGTTTGGTCGTTGTATTGTTATGAAGAAGTATAATGCCATCATTCAGAAGCATTCGAATGACACATCAGACCGAATACTTAGGCCTAATAGAACTGCAGACACCGCTGGACGTATGCAGATACTTGATGATGATGGTATTGCTGCTCCTGGGGAAATTCTTAGGCCATATGACATCTATATCAATAAACAATCACCGATTGATACACGTACTCCAAAAACAGGATCTGCAGCAAATTTGCCAGATAGTGCATATCGGTCCAATGCACAATCATTCAAGGGTAATGGAGGAGAAGTAGTTGATAGGGTGGTTCTATGCTCGGATAAGGATAATAACATGTGTATCAAATTTCTAATTCGTCACACTCGTAGACCTGAGCTTGGTGATAAGTTTAGCAGCAGACATGGGCAAAAAGGTGTTTGCGGAACTATTGTCCCGCAAGAAGACTTTCCGTTTTCTGAGAAAGGCATTTGTCCTGATCTGATTATGAATCCTCATGGTTTCCCAAGTCGAATGACTGTTGGAAAGATGATAGAGCTTCTTGGGGGGAAAGCAGGGGTTTCATGTGGTAGGTTTCATTACGGCAGTGCTTTTGGGGAGAGAAGTGGTCATGCTGACAAGGTTGAAACCATAAGTGAAACTCTTGTGAGTAAAGGCTTCAACTACAGTGGGAAAGATTTCATTTATTCAGGTATTACGGGTTGCCCACTGCAAGCATATATTTTCATGGGTCCAATTTACTACCAGAAATTAAAACATATGGTGCTTGATAAGATGCATGCTCGTGGTAGTGGCCCTCGTGTCATGTTAACTAGACAGCCTACAGAAGGGAGAGCTAGAAATGGAGGTCTTCGTGTTGGAGAAATGGAACGTGATTGCTTGATTGCATATGGTGCTAGTATGTTAATTTATGAGCGACTCATGTTGTCTAGTGATCCTTTTGAAGTTCAGGTATGTACCGCATGTGGGTTGTTAGGATATTACAACCATAAGCTGAAAACTGGTATTTGTTCATCTTGTAAGAATGGAGACAATATTTCTACCATGAAGCTACCATATGCATGCAAGCTCATGATTCAGGAACTCCAATCAATGAATATTGTTCCCCGCTTAAAACTGGCAGATGCGTGA
>Glyma01g00975.1 sequence type=predicted peptide gene model=Glyma01g00975 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLKHDPLQQPTTNQFNGGNKLPGDHCGDSGFDQRVLTAPIKSAVDKFQLIPEFLKVRGLVKQHLDSFNYFVRTDIKKIVRANNLIMASRYPHIYLRFLNVGIGKPSMMIDEVTEGLTPQTCRLSDLTYAAPICADVEYTLRSHDKPDNKRTLRVEIGRMPIMLRSCCCVLHGKDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNITASVTSSTEKIKTKTVIVMENEKLWLQLNKFPKKVPLMVVMKAMGMESDQEVIQMVGRDPRYSFLLLPSIEECRKCKVYTKEQALEYLDKLVKRPTYSSNSAEKEGAAFSALRDVFLANVPVDQDNFQKKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDICTLLTRTRSIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLFYSLDVARIEHLFAEELHTPDSFLVIFNGLILGKHRRPLHFATRIRKLRRAGEIGEFVSVYVNEKQHCVYLASDGGRVCRPLVIADKGISRIKQHHMKELMDGVCTFDDFLRDGLLEYLDVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKHSNDTSDRILRPNRTADTAGRMQILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKTGSAANLPDSAYRSNAQSFKGNGGEVVDRVVLCSDKDNNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLMIQELQSMNIVPRLKLADA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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