SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19790 | AT | Annotation by Michelle Graham. TAIR10: SNARE-like superfamily protein | chr2:8527302-8528395 FORWARD LENGTH=143 | SoyBase | E_val: 9.00E-99 | ISS |
| GO:0006301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: postreplication repair | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0030125 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: clathrin vesicle coat | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG0934 | KOG | Clathrin adaptor complex, small subunit | JGI | ISS | |
| PTHR11753 | Panther | CLATHRIN COAT ASSEMBLY PROTEIN | JGI | ISS | |
| PF01217 | PFAM | Clathrin adaptor complex small chain | JGI | ISS | |
| UniRef100_B9RKE4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AP-4 complex subunit sigma-1, putative n=1 Tax=Ricinus communis RepID=B9RKE4_RICCO | SoyBase | E_val: 2.00E-97 | ISS |
| UniRef100_C6SXR3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXR3_SOYBN | SoyBase | E_val: 2.00E-100 | ISS |
|
Glyma01g00860 not represented in the dataset |
Glyma01g00860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g15160 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g005300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g00860.2 sequence type=transcript gene model=Glyma01g00860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTGTGTTGAAGAAATAATAAGGTGTGGTTGGGGTTGGGAGTTAGGGTAGAATCAATTGAGAATGGGGATCCGATTCGTACTGATGGTGAACAAGCAAGGCCAAACTCGTCTTGCTCAATATTACGAATACCTCACTCTCGAAGAGCGACGTGCCCTCGAAGGCGAAATCGTTCGCAAATGCCTCGCCCGCAACGAACAGCAGTGTTCCTTTGTTGAGCATCGCAACTACAAAATTGTTTATCGGCGCTACGCCTCTTTGTTTTTCCTCGTTGGAGTCGACGATGATGAGAATGAGCTGGCAATTTTGGAATTTATACATCTCTTGGTTGAAACTATGGATCGTCATTTCGGCAATGTGGTGAGTTCTGCTTTCCAAACTTATCTATTTTCTTCCTTTCCTTTCTAGAATGTAGAATCTCGTGGAAGTTTTTTATATGTCTCATCCCCTTATACTTGCAGTGCGAGCTAGATATTATGTTCCATTTAGAAAAGGCGCATTTTATGTTGGAGGAGATGGTCATGAATGGTTGTATTGTGGAGACAAGCAAATCAAATATTTTGACTCCAATTCAGCTGATGGATAAAACATCTTGAAGGATAAAAAAGAATACCCTGTGATTGATGTATCATTAGTGACTCATTGCAACCTTTCTCTGTACAATAGATAAGATAATCTCCAATTTTCAGTTTGAATGGAAATACGAGTGTAACTATTTGTTTTATTTTCCTCTCTCCCTTTGTATGAATGATCATGATTATGAACTTGATTTTTCAAATGGCACCTGGCATTAGCACAATACCCTAATAATGGAAAGACTTAAATATGTTTCTGGTCCATGAAAGTTAGTATT >Glyma01g00860.3 sequence type=transcript gene model=Glyma01g00860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTGTGTTGAAGAAATAATAAGGTGTGGTTGGGGTTGGGAGTTAGGGTAGAATCAATTGAGAATGGGGATCCGATTCGTACTGATGGTGAACAAGCAAGGCCAAACTCGTCTTGCTCAATATTACGAATACCTCACTCTCGAAGAGCGACGTGCCCTCGAAGGCGAAATCGTTCGCAAATGCCTCGCCCGCAACGAACAGCAGTGTTCCTTTGTTGAGCATCGCAACTACAAAATTGTTTATCGGCGCTACGCCTCTTTGTTTTTCCTCGTTGGAGTCGACGATGATGAGGTAAATAAATCCTTTTCTCTATGCTGTATTTTCAATTGGTTCATCAAAACACAGTGAAATTTGCACCTAGCTAAAAAAAAAACATGTCTTTAGAACGTAAAATAATTGCGTGAAATACTTCGAACTGTGAACTTATTGCTTACGGCGTCATGTCAAGTAAGTGTTATCTGCCCCAAGACATGACTTTTGTAAATAAATTGTAAGCTTGTTAAAGCTGTGCAACTTTAATGGAATTTTATATATATCACTTGGATTTAGCTCCTCTACTAAAGTAAGGGTAAAATAAGTATTCACGTTGATGAGAAAATTAACAGATGATGCTCCAATACATTTATGATTTGTTGTG
>Glyma01g00860.1 sequence type=CDS gene model=Glyma01g00860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGATCCGATTCGTACTGATGGTGAACAAGCAAGGCCAAACTCGTCTTGCTCAATATTACGAATACCTCACTCTCGAAGAGCGACGTGCCCTCGAAGGCGAAATCGTTCGCAAATGCCTCGCCCGCAACGAACAGCAGTGTTCCTTTGTTGAGCATCGCAACTACAAAATTGTTTATCGGCGCTACGCCTCTTTGTTTTTCCTCGTTGGAGTCGACGATGATGAGAATGAGCTGGCAATTTTGGAATTTATACATCTCTTGGTTGAAACTATGGATCGTCATTTCGGCAATGTGTGCGAGCTAGATATTATGTTCCATTTAGAAAAGGCGCATTTTATGTTGGAGGAGATGGTCATGAATGGTTGTATTGTGGAGACAAGCAAATCAAATATTTTGACTCCAATTCAGCTGATGGATAAAACATCTTGA >Glyma01g00860.2 sequence type=CDS gene model=Glyma01g00860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGATCCGATTCGTACTGATGGTGAACAAGCAAGGCCAAACTCGTCTTGCTCAATATTACGAATACCTCACTCTCGAAGAGCGACGTGCCCTCGAAGGCGAAATCGTTCGCAAATGCCTCGCCCGCAACGAACAGCAGTGTTCCTTTGTTGAGCATCGCAACTACAAAATTGTTTATCGGCGCTACGCCTCTTTGTTTTTCCTCGTTGGAGTCGACGATGATGAGAATGAGCTGGCAATTTTGGAATTTATACATCTCTTGGTTGAAACTATGGATCGTCATTTCGGCAATGTGGTGAGTTCTGCTTTCCAAACTTATCTATTTTCTTCCTTTCCTTTCTAG >Glyma01g00860.3 sequence type=CDS gene model=Glyma01g00860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGATCCGATTCGTACTGATGGTGAACAAGCAAGGCCAAACTCGTCTTGCTCAATATTACGAATACCTCACTCTCGAAGAGCGACGTGCCCTCGAAGGCGAAATCGTTCGCAAATGCCTCGCCCGCAACGAACAGCAGTGTTCCTTTGTTGAGCATCGCAACTACAAAATTGTTTATCGGCGCTACGCCTCTTTGTTTTTCCTCGTTGGAGTCGACGATGATGAGGTAAATAAATCCTTTTCTCTATGCTGTATTTTCAATTGGTTCATCAAAACACAGTGA
>Glyma01g00860.1 sequence type=predicted peptide gene model=Glyma01g00860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILTPIQLMDKTS* >Glyma01g00860.2 sequence type=predicted peptide gene model=Glyma01g00860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVVSSAFQTYLFSSFPF* >Glyma01g00860.3 sequence type=predicted peptide gene model=Glyma01g00860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDDDEVNKSFSLCCIFNWFIKTQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
