Glyma01g00730 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma01g00730): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma01g00730): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma01g00730

Feature Type:	gene_model
Chromosome:	Gm01
Start:	425500
stop:	427881
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g00730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26220	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:13284179-13285146 FORWARD LENGTH=232	SoyBase	E_val: 2.00E-102	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-methyltransferase activity	SoyBase	N/A	ISS
KOG1663	KOG	O-methyltransferase	JGI		ISS
PTHR10509	Panther	O-METHYLTRANSFERASE	JGI		ISS
PF01596	PFAM	O-methyltransferase	JGI		ISS
UniRef100_G7KJ71	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Caffeoyl-CoA O-methyltransferase n=1 Tax=Medicago truncatula RepID=G7KJ71_MEDTR	SoyBase	E_val: 2.00E-139	ISS
UniRef100_I1J4D5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4D5_SOYBN	SoyBase	E_val: 1.00E-172	ISS

Expression Patterns of Glyma01g00730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g00730 not represented in the dataset	Glyma01g00730 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g00730

Paralog	Evidence	Comments
Glyma07g15341	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g00730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g004200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g00730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g00730

Limit To All Plant Sequences

>Glyma01g00730.4   sequence type=transcript   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGTTTTATGACTTATAAGCCGCCTCGTTTGACAGCTAAAAGAATAGTAGTAGTATTTGACCAAAGCTCTCTCATTCATTACTACATAAGAGCGGTGAAATAGAGCCATGCAATGCAGTGCTGTGAATTAAGCTTCAATCACATACTTCTTCTCCTAGATCTAGAACTTGTTGTGAACTGAACAACATATATATTCTAAGCTCTTTGAACTTATCCTTCACTGATCAGATTCAGAGAAATGGAAAACATCAAAGATCCATCAATTTACCGCAATCCAGTCATATTGCAGAGCGAGGACTTAACCAAGGTCTGCATACTAACTCATCTTGGAATTTTTCATTATATATGTTCATTCCTTCATGGTGTGTTTTTTTTATCCTTGTGAGAATCGAAAACAGGCGTTTACAACAATTCACGTATCTTATTTAACCAACTGAGCTAGACCACCTTAACTACTTTCTGGTGTCTTCACACACACATATCTTGATTAATGAAAAGAAAACAAATTCATCACTTGTGAATTGATGTGGCAGTATATTCTGGAAACTGCTGTTTACCCTAGAGAACCTGCGCCTCTAAAAGAGCTGAGGGAAGCCACTAATAATCACCCTTGGGGCTTCATTGCTACTTTACCTGAAGCGGGTCAGCTAATGACCTTACTTTTGAAGCTGTTGAATCCCAAAAAGACCATTGAAGTGGGAGTGTTTACTGGTTATTCCCTTCTCCTCACCGCACTCAACATTCCTCATGATGGAAAGATTACAGCCATAGATATTAACAGGAAAACTTATGAGGTTGGTTTACCAGTCATCAAAAAGGCTGGAGTTGAGCACAAGATTGATTTCATAGAGTCTCCAGCTCTACCAATTTTGGATAAGCTACTTGAAGATCCTGCAAATGAAGGATCTTTTGACTTTGCCTTCATTGATGCTGACAAGGAGAACTATGTGAACTACCATGAGAGGCTTATAAAGCTGGTCAAGATTGGGGGGTTGCTTGTGTATGACAACACACTGTGGGGTGGACGTGTTTGCTGGCCTGAAGACAAAGTTCCACCACACGCTAGATCAGGGAGGGACGCTGCAATTGAATTTAACAAAACAATCACAAACGATTCTCGTGTTGAATTTGCTCTTACTTCCGTAGGGGATGGGCTCAATATTTGTAGGCGCGTTGCTTGACTTTTGTGTTAATGCTCTGCTATCGTATAATTTGTATTTCTAGTAGCCACCTGAATAAACATTGCATTTTGTGTTCCTAATAAACTTTTGGTTTCATGTTACATTACTACAAGTTAGTTTTATTTAACGCTTCAATGGAAATGGAGAAAATTAAAACCTTGGACCTTGCGTTTCAAAACTTTTATCTAAAA

>Glyma01g00730.5   sequence type=transcript   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGTTTTATGACTTATAAGCCGCCTCGTTTGACAGCTAAAAGAATAGTAGTAGTATTTGACCAAAGCTCTCTCATTCATTACTACATAAGAGCGGTGAAATAGAGCCATGCAATGCAGTGCTGTGAATTAAGCTTCAATCACATACTTCTTCTCCTAGATCTAGAACTTGTTGTGAACTGAACAACATATATATTCTAAGCTCTTTGAACTTATCCTTCACTGATCAGATTCAGAGAAATGGAAAACATCAAAGATCCATCAATTTACCGCAATCCAGTCATATTGCAGAGCGAGGACTTAACCAAGTATATTCTGGAAACTGCTGTTTACCCTAGAGAACCTGCGCCTCTAAAAGAGCTGAGGGAAGCCACTAATAATCACCCTTGGGGCTTCATTGCTACTTTACCTGAAGCGGGTCAGCTAATGACCTTACTTTTGAAGCTGTTGAATCCCAAAAAGACCATTGAAGTGGGAGTGTTTACTGGTTATTCCCTTCTCCTCACCGCACTCAACATTCCTCATGATGGAAAGATTACAGCCATAGATATTAACAGGAAAACTTATGAGGTTGGTTTACCAGTCATCAAAAAGGCTGGAGTTGAGCACAAGATTGATTTCATAGAGTCTCCAGCTCTACCAATTTTGGATAAGCTACTTGAAGATCCTGCAAATGAAGGATCTTTTGACTTTGCCTTCATTGATGCTGACAAGGAGAACTATGTGAACTACCATGAGAGGCTTATAAAGCTGGTCAAGATTGGGGGGTTGCTTGTGTATGACAACACACTGTGGGGTGGACGTGTTTGCTGGCCTGAAGACAAAGTTCCACCACACGCTAGATCAGGGAGGGACGCTGCAATTGAATTTAACAAAACAATCACAAACGATTCTCGTGTTGAATTTGCTCTTACTTCCGTAGGGGATGGGCTCAATATTTGTAGGCGCGTTGCTTGACTTTTGTGTTAATGCTCTGCTATCGTATAATTTGTATTTCTAGTAGCCACCTGAATAAACATTGCATTTTGTGTTCCTAATAAACTTTTGGTTTCATGTTACATTACTACAAGTTAGTTTTATTTAACGCTTCAATGGAAATGGAGAAAATTAAAACCTTGGACCTTGCGTTTCAAAACTTTTATCTAAAA

>Glyma01g00730.6   sequence type=transcript   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGTTTTATGACTTATAAGCCGCCTCGTTTGACAGCTAAAAGAATAGTAGTAGTATTTGACCAAAGCTCTCTCATTCATTACTACATAAGAGCGGTGAAATAGAGCCATGCAATGCAGTGCTGTGAATTAAGCTTCAATCACATACTTCTTCTCCTAGATCTAGAACTTGTTGTGAACTGAACAACATATATATTCTAAGCTCTTTGAACTTATCCTTCACTGATCAGATTCAGGATCTTTTGTCTCTTACCCTTTGAAGGACCCTGCCCCTTATAGTGTTGTTGATTTCAGAGAAATGGAAAACATCAAAGATCCATCAATTTACCGCAATCCAGTCATATTGCAGAGCGAGGACTTAACCAAGTATATTCTGGAAACTGCTGTTTACCCTAGAGAACCTGCGCCTCTAAAAGAGCTGAGGGAAGCCACTAATAATCACCCTTGGGGCTTCATTGCTACTTTACCTGAAGCGGGTCAGCTAATGACCTTACTTTTGAAGCTGTTGAATCCCAAAAAGACCATTGAAGTGGGAGTGTTTACTGGTTATTCCCTTCTCCTCACCGCACTCAACATTCCTCATGATGGAAAGATTACAGCCATAGATATTAACAGGAAAACTTATGAGGTTGGTTTACCAGTCATCAAAAAGGCTGGAGTTGAGCACAAGATTGATTTCATAGAGTCTCCAGCTCTACCAATTTTGGATAAGCTACTTGAAGATCCTGCAAATGAAGGATCTTTTGACTTTGCCTTCATTGATGCTGACAAGGAGAACTATGTGAACTACCATGAGAGGCTTATAAAGCTGGTCAAGATTGGGGGGTTGCTTGTGTATGACAACACACTGTGGGGTGGACGTGTTTGCTGGCCTGAAGACAAAGTTCCACCACACGCTAGATCAGGGAGGGACGCTGCAATTGAATTTAACAAAACAATCACAAACGATTCTCGTGTTGAATTTGCTCTTACTTCCGTAGGGGATGGGCTCAATATTTGTAGGCGCGTTGCTTGACTTTTGTGTTAATGCTCTGCTATCGTATAATTTGTATTTCTAGTAGCCACCTGAATAAACATTGCATTTTGTGTTCCTAATAAACTTTTGGTTTCATGTTACATTACTACAAGTTAGTTTTATTTAACGCTTCAATGGAAATGGAGAAAATTAAAACCTTGGACCTTGCGTTTCAAAACTTTTATCTAAAA

Coding sequences of Glyma01g00730

Limit To All Plant Sequences

>Glyma01g00730.1   sequence type=CDS   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACATCAAAGATCCATCAATTTACCGCAATCCAGTCATATTGCAGAGCGAGGACTTAACCAAGTATATTCTGGAAACTGCTGTTTACCCTAGAGAACCTGCGCCTCTAAAAGAGCTGAGGGAAGCCACTAATAATCACCCTTGGGGCTTCATTGCTACTTTACCTGAAGCGGGTCAGCTAATGACCTTACTTTTGAAGCTGTTGAATCCCAAAAAGACCATTGAAGTGGGAGTGTTTACTGGTTATTCCCTTCTCCTCACCGCACTCAACATTCCTCATGATGGAAAGATTACAGCCATAGATATTAACAGGAAAACTTATGAGGTTGGTTTACCAGTCATCAAAAAGGCTGGAGTTGAGCACAAGATTGATTTCATAGAGTCTCCAGCTCTACCAATTTTGGATAAGCTACTTGAAGATCCTGCAAATGAAGGATCTTTTGACTTTGCCTTCATTGATGCTGACAAGGAGAACTATGTGAACTACCATGAGAGGCTTATAAAGCTGGTCAAGATTGGGGGGTTGCTTGTGTATGACAACACACTGTGGGGTGGACGTGTTTGCTGGCCTGAAGACAAAGTTCCACCACACGCTAGATCAGGGAGGGACGCTGCAATTGAATTTAACAAAACAATCACAAACGATTCTCGTGTTGAATTTGCTCTTACTTCCGTAGGGGATGGGCTCAATATTTGTAGGCGCGTTGCTTGA

>Glyma01g00730.4   sequence type=CDS   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCAGTATATTCTGGAAACTGCTGTTTACCCTAGAGAACCTGCGCCTCTAAAAGAGCTGAGGGAAGCCACTAATAATCACCCTTGGGGCTTCATTGCTACTTTACCTGAAGCGGGTCAGCTAATGACCTTACTTTTGAAGCTGTTGAATCCCAAAAAGACCATTGAAGTGGGAGTGTTTACTGGTTATTCCCTTCTCCTCACCGCACTCAACATTCCTCATGATGGAAAGATTACAGCCATAGATATTAACAGGAAAACTTATGAGGTTGGTTTACCAGTCATCAAAAAGGCTGGAGTTGAGCACAAGATTGATTTCATAGAGTCTCCAGCTCTACCAATTTTGGATAAGCTACTTGAAGATCCTGCAAATGAAGGATCTTTTGACTTTGCCTTCATTGATGCTGACAAGGAGAACTATGTGAACTACCATGAGAGGCTTATAAAGCTGGTCAAGATTGGGGGGTTGCTTGTGTATGACAACACACTGTGGGGTGGACGTGTTTGCTGGCCTGAAGACAAAGTTCCACCACACGCTAGATCAGGGAGGGACGCTGCAATTGAATTTAACAAAACAATCACAAACGATTCTCGTGTTGAATTTGCTCTTACTTCCGTAGGGGATGGGCTCAATATTTGTAGGCGCGTTGCTTGA

>Glyma01g00730.5   sequence type=CDS   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACATCAAAGATCCATCAATTTACCGCAATCCAGTCATATTGCAGAGCGAGGACTTAACCAAGTATATTCTGGAAACTGCTGTTTACCCTAGAGAACCTGCGCCTCTAAAAGAGCTGAGGGAAGCCACTAATAATCACCCTTGGGGCTTCATTGCTACTTTACCTGAAGCGGGTCAGCTAATGACCTTACTTTTGAAGCTGTTGAATCCCAAAAAGACCATTGAAGTGGGAGTGTTTACTGGTTATTCCCTTCTCCTCACCGCACTCAACATTCCTCATGATGGAAAGATTACAGCCATAGATATTAACAGGAAAACTTATGAGGTTGGTTTACCAGTCATCAAAAAGGCTGGAGTTGAGCACAAGATTGATTTCATAGAGTCTCCAGCTCTACCAATTTTGGATAAGCTACTTGAAGATCCTGCAAATGAAGGATCTTTTGACTTTGCCTTCATTGATGCTGACAAGGAGAACTATGTGAACTACCATGAGAGGCTTATAAAGCTGGTCAAGATTGGGGGGTTGCTTGTGTATGACAACACACTGTGGGGTGGACGTGTTTGCTGGCCTGAAGACAAAGTTCCACCACACGCTAGATCAGGGAGGGACGCTGCAATTGAATTTAACAAAACAATCACAAACGATTCTCGTGTTGAATTTGCTCTTACTTCCGTAGGGGATGGGCTCAATATTTGTAGGCGCGTTGCTTGA

>Glyma01g00730.6   sequence type=CDS   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACATCAAAGATCCATCAATTTACCGCAATCCAGTCATATTGCAGAGCGAGGACTTAACCAAGTATATTCTGGAAACTGCTGTTTACCCTAGAGAACCTGCGCCTCTAAAAGAGCTGAGGGAAGCCACTAATAATCACCCTTGGGGCTTCATTGCTACTTTACCTGAAGCGGGTCAGCTAATGACCTTACTTTTGAAGCTGTTGAATCCCAAAAAGACCATTGAAGTGGGAGTGTTTACTGGTTATTCCCTTCTCCTCACCGCACTCAACATTCCTCATGATGGAAAGATTACAGCCATAGATATTAACAGGAAAACTTATGAGGTTGGTTTACCAGTCATCAAAAAGGCTGGAGTTGAGCACAAGATTGATTTCATAGAGTCTCCAGCTCTACCAATTTTGGATAAGCTACTTGAAGATCCTGCAAATGAAGGATCTTTTGACTTTGCCTTCATTGATGCTGACAAGGAGAACTATGTGAACTACCATGAGAGGCTTATAAAGCTGGTCAAGATTGGGGGGTTGCTTGTGTATGACAACACACTGTGGGGTGGACGTGTTTGCTGGCCTGAAGACAAAGTTCCACCACACGCTAGATCAGGGAGGGACGCTGCAATTGAATTTAACAAAACAATCACAAACGATTCTCGTGTTGAATTTGCTCTTACTTCCGTAGGGGATGGGCTCAATATTTGTAGGCGCGTTGCTTGA

Predicted protein sequences of Glyma01g00730

Limit To All Plant Sequences

>Glyma01g00730.1   sequence type=predicted peptide   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENIKDPSIYRNPVILQSEDLTKYILETAVYPREPAPLKELREATNNHPWGFIATLPEAGQLMTLLLKLLNPKKTIEVGVFTGYSLLLTALNIPHDGKITAIDINRKTYEVGLPVIKKAGVEHKIDFIESPALPILDKLLEDPANEGSFDFAFIDADKENYVNYHERLIKLVKIGGLLVYDNTLWGGRVCWPEDKVPPHARSGRDAAIEFNKTITNDSRVEFALTSVGDGLNICRRVA*

>Glyma01g00730.4   sequence type=predicted peptide   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWQYILETAVYPREPAPLKELREATNNHPWGFIATLPEAGQLMTLLLKLLNPKKTIEVGVFTGYSLLLTALNIPHDGKITAIDINRKTYEVGLPVIKKAGVEHKIDFIESPALPILDKLLEDPANEGSFDFAFIDADKENYVNYHERLIKLVKIGGLLVYDNTLWGGRVCWPEDKVPPHARSGRDAAIEFNKTITNDSRVEFALTSVGDGLNICRRVA*

>Glyma01g00730.5   sequence type=predicted peptide   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENIKDPSIYRNPVILQSEDLTKYILETAVYPREPAPLKELREATNNHPWGFIATLPEAGQLMTLLLKLLNPKKTIEVGVFTGYSLLLTALNIPHDGKITAIDINRKTYEVGLPVIKKAGVEHKIDFIESPALPILDKLLEDPANEGSFDFAFIDADKENYVNYHERLIKLVKIGGLLVYDNTLWGGRVCWPEDKVPPHARSGRDAAIEFNKTITNDSRVEFALTSVGDGLNICRRVA*

>Glyma01g00730.6   sequence type=predicted peptide   gene model=Glyma01g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENIKDPSIYRNPVILQSEDLTKYILETAVYPREPAPLKELREATNNHPWGFIATLPEAGQLMTLLLKLLNPKKTIEVGVFTGYSLLLTALNIPHDGKITAIDINRKTYEVGLPVIKKAGVEHKIDFIESPALPILDKLLEDPANEGSFDFAFIDADKENYVNYHERLIKLVKIGGLLVYDNTLWGGRVCWPEDKVPPHARSGRDAAIEFNKTITNDSRVEFALTSVGDGLNICRRVA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain