SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G29510 | AT | Annotation by Michelle Graham. TAIR10: arginine methyltransferase 11 | chr4:14491739-14493752 FORWARD LENGTH=390 | SoyBase | E_val: 0 | ISS |
| GO:0006479 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein methylation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008276 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein methyltransferase activity | SoyBase | N/A | ISS |
| GO:0016274 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein-arginine N-methyltransferase activity | SoyBase | N/A | ISS |
| KOG1499 | KOG | Protein arginine N-methyltransferase PRMT1 and related enzymes | JGI | ISS | |
| PTHR11006 | Panther | PROTEIN ARGININE N-METHYLTRANSFERASE | JGI | ISS | |
| PTHR11006:SF36 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF06325 | PFAM | Ribosomal protein L11 methyltransferase (PrmA) | JGI | ISS | |
| UniRef100_G7KJ80 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Arginine methyltransferease n=2 Tax=Medicago truncatula RepID=G7KJ80_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J4C9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4C9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g00690 not represented in the dataset |
Glyma01g00690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g15390 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g003800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g00690.2 sequence type=transcript gene model=Glyma01g00690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTGCAACCTGTCTAAGCAATTCTATGAATTACAAGGAAAACCAAATTTCAAATATTCAAATTTTTTTCATACTTCATAGAAAGGTACTATGTTATAACTTGTTTCTATGTTGCAGGAGATGTTGAAGGACACTGTGAGAACCAAGACATATCAAAATGTTATTTATCAGAACAAGTTTTTATTCAAGAATAAAGTAGTTCTTGATGTTGGTGCTGGGACTGGGATTTTATCACTATTTTGTGCCAAAGCAGGGGCAGAACACGTCTATGCGGTTGAGTGCTCCCACATGGCTGACATGGCAAAGGAGATTGTTGAAGCTAATGGTTACTCTAATGTTGTAACAGTTTTGAAGGGGAAGATTGAAGAAATTGAACTTCCAGTTGCTAAAGTTGATATAATTATTTCAGAATGGATGGGATATTTCTTGTTGTTTGAGAATATGTTAAATTCGGTGCTCTATGCTCGTGACAAATGGCTTGTGGATGGCGGAGTTGTGCTACCAGACAAAGCATCCCTCCATCTCACTGCTATTGAAGATGCTGACTATAAAGAAGATAAAATTGAGTTTTGGAACAATGTATATGGATTTGACATGAGCTGCATCAAGAAGCAAGCCATAATGGAGCCTCTTGTTGACACAGTCGACCAGAATCAGATTGCTACAAACTGTCAGCTACTCAAGACAATGGATATCTCAAAGATGGCTCCTGGAGATGCTTCATTCACAGTACCTTTTAAGCTTGTAGCTGAACGTGATGACTATATTCATGCTCTTGTTGCATATTTTGATGTATCGTTTACAAAGTGTCATAAATTGATGGGCTTCTCTACAGGACCAAGATCACGAGCTACGCATTGGAAACAAACAGTCCTATACCTGGAAGATGTCTTGACCATTTGTGAGGGGGAGGCAATTGTGGGGAGCATGGCTGTTGCTCCAAATAAAAAAAATCCTCGGGATGTTGATATAATGCTCAAGTATTCATTGAATGGAAGGCGATGCAATGTTTCAAGGGTTCAGTACTACAAGATGCGTTGAACCTGGTATATTGGCTCGTGTTTTCCCATTGTTTCTCCAATTTGTAAGATTTTGACAATTGCTGCTTCTATTTCAAGATAGAGGCTGCCTTTTAATGGATGTAACTTGTTTCCTATTTTATTTGAATTCTGTCTCATCATTGCTCAATTATGTTATCGATGTAATGATAAAATTTGAAGTCTATTTATTGTTTACTATTTATTTTGTTCCCCTCTTGCCCTGAGGATGATATGTCACCAAGAAATACATGCAAATGCTGCCGTGCTTGGGAAGTATCTGAATCTGCTGTACTACTACTAGTGTCCTATTGTACTAAAATGAAAACTGCAACACACTTTGATGAATCCTAATACCACGTGATTACTTGCAAAGTGTAATCATCATACGAGCCGAG
>Glyma01g00690.1 sequence type=CDS gene model=Glyma01g00690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCAGCGAAAGAACGACAACAACATCAATCAGTGCTCCTCAAGCAAGGAAGACGCTGACATGAATAACAACCACCTTCGCTTTGAAGAGGCTGTCGACGAGAGTTCCAACCTCGACCAATCCATGTGCGACATCGAAGAATCCGATGATAAAACCAGCGCCGACTATTACTTCGATTCCTACTCTCATTTTGGAATTCACGAAGAGATGTTGAAGGACACTGTGAGAACCAAGACATATCAAAATGTTATTTATCAGAACAAGTTTTTATTCAAGAATAAAGTAGTTCTTGATGTTGGTGCTGGGACTGGGATTTTATCACTATTTTGTGCCAAAGCAGGGGCAGAACACGTCTATGCGGTTGAGTGCTCCCACATGGCTGACATGGCAAAGGAGATTGTTGAAGCTAATGGTTACTCTAATGTTGTAACAGTTTTGAAGGGGAAGATTGAAGAAATTGAACTTCCAGTTGCTAAAGTTGATATAATTATTTCAGAATGGATGGGATATTTCTTGTTGTTTGAGAATATGTTAAATTCGGTGCTCTATGCTCGTGACAAATGGCTTGTGGATGGCGGAGTTGTGCTACCAGACAAAGCATCCCTCCATCTCACTGCTATTGAAGATGCTGACTATAAAGAAGATAAAATTGAGTTTTGGAACAATGTATATGGATTTGACATGAGCTGCATCAAGAAGCAAGCCATAATGGAGCCTCTTGTTGACACAGTCGACCAGAATCAGATTGCTACAAACTGTCAGCTACTCAAGACAATGGATATCTCAAAGATGGCTCCTGGAGATGCTTCATTCACAGTACCTTTTAAGCTTGTAGCTGAACGTGATGACTATATTCATGCTCTTGTTGCATATTTTGATGTATCGTTTACAAAGTGTCATAAATTGATGGGCTTCTCTACAGGACCAAGATCACGAGCTACGCATTGGAAACAAACAGTCCTATACCTGGAAGATGTCTTGACCATTTGTGAGGGGGAGGCAATTGTGGGGAGCATGGCTGTTGCTCCAAATAAAAAAAATCCTCGGGATGTTGATATAATGCTCAAGTATTCATTGAATGGAAGGCGATGCAATGTTTCAAGGGTTCAGTACTACAAGATGCGTTGA >Glyma01g00690.2 sequence type=CDS gene model=Glyma01g00690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCAGGAGATGTTGAAGGACACTGTGAGAACCAAGACATATCAAAATGTTATTTATCAGAACAAGTTTTTATTCAAGAATAAAGTAGTTCTTGATGTTGGTGCTGGGACTGGGATTTTATCACTATTTTGTGCCAAAGCAGGGGCAGAACACGTCTATGCGGTTGAGTGCTCCCACATGGCTGACATGGCAAAGGAGATTGTTGAAGCTAATGGTTACTCTAATGTTGTAACAGTTTTGAAGGGGAAGATTGAAGAAATTGAACTTCCAGTTGCTAAAGTTGATATAATTATTTCAGAATGGATGGGATATTTCTTGTTGTTTGAGAATATGTTAAATTCGGTGCTCTATGCTCGTGACAAATGGCTTGTGGATGGCGGAGTTGTGCTACCAGACAAAGCATCCCTCCATCTCACTGCTATTGAAGATGCTGACTATAAAGAAGATAAAATTGAGTTTTGGAACAATGTATATGGATTTGACATGAGCTGCATCAAGAAGCAAGCCATAATGGAGCCTCTTGTTGACACAGTCGACCAGAATCAGATTGCTACAAACTGTCAGCTACTCAAGACAATGGATATCTCAAAGATGGCTCCTGGAGATGCTTCATTCACAGTACCTTTTAAGCTTGTAGCTGAACGTGATGACTATATTCATGCTCTTGTTGCATATTTTGATGTATCGTTTACAAAGTGTCATAAATTGATGGGCTTCTCTACAGGACCAAGATCACGAGCTACGCATTGGAAACAAACAGTCCTATACCTGGAAGATGTCTTGACCATTTGTGAGGGGGAGGCAATTGTGGGGAGCATGGCTGTTGCTCCAAATAAAAAAAATCCTCGGGATGTTGATATAATGCTCAAGTATTCATTGAATGGAAGGCGATGCAATGTTTCAAGGGTTCAGTACTACAAGATGCGTTGA
>Glyma01g00690.1 sequence type=predicted peptide gene model=Glyma01g00690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGQRKNDNNINQCSSSKEDADMNNNHLRFEEAVDESSNLDQSMCDIEESDDKTSADYYFDSYSHFGIHEEMLKDTVRTKTYQNVIYQNKFLFKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDADYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDASFTVPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTICEGEAIVGSMAVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR* >Glyma01g00690.2 sequence type=predicted peptide gene model=Glyma01g00690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLQEMLKDTVRTKTYQNVIYQNKFLFKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDADYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDASFTVPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTICEGEAIVGSMAVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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