Glyma01g00640 - SoyBase

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Report for Sequence Feature Glyma01g00640

Feature Type:	gene_model
Chromosome:	Gm01
Start:	380016
stop:	381810
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g00640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15690	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr2:6831855-6833594 REVERSE LENGTH=579	SoyBase	E_val: 1.00E-142	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KJ88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KJ88_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337411	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337411 related cluster n=1 Tax=unknown RepID=UPI0002337411	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g00640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g00640

Paralog	Evidence	Comments
Glyma07g15440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g00640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g003400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g00640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g00640

Limit To All Plant Sequences

>Glyma01g00640.2   sequence type=CDS   gene model=Glyma01g00640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTCAAACTCCACACATCAATGGCTTCCATTCCACGCGCAGTCTTCACCCATTCCTCTTCATCCATTCCTTTCTGCGCCTACGCGGTCCCCAATGCGAGCAGGCGCCGAAACGGCACCAACAACAGTCGTTCCACTCACAAAATCCCTCCTTTGTGTAAGGGGAACCTTCCCAATGAACAGAAATTGCAGCTCGACCATCAAAACCAAAACGCCCCATTACCCTTGAATGTGGACTTGGTGTCCCTGTGTGAAGAGGGTAACCTTGATCAAGTATTGGAACTCATGGGTCAAGGTGCTGTTGCTGATTATCGCGTTTATCTCGCGCTCTTGAATTTGTGTGAGCATACAAGGTCGCTTGAATCGGGCAAAAGGGTCCATGAATTCCTGAGAAGATCGACCTTTCGTAGGGACGTTGAATTGAGCAACAGATTGATCGGAATGTACTGCAAATGTGGCAGTGTGAAGGATGCACGCCGAGTGTTTGATCAAATTCCGGAGAGAAACATCTCTTCGTGGCATTTGATGATTGGTGGGTACGCAGCCAATGGTTTAGGGTGTGATGGTTTATTGGTTTTTCAGCAGATGAAGCAAGCAGGGGTGCCACCTGATGGGGAAACTTTTGAATTGGTTTTGGCTGCATGTGCACAGGCAGAAGCTGTGGAAGAAGGGTTTTTACACTTTGAGTCCATGAAGGAGCATGGAATTGTTCCTAGCATGGAGCATTACTTGGAGGTTATTAACATTCTGGGGAATACTGGCCAGTTGAATGAAGCTGAGGAGTTCATTGAGAAGATACCAATTGAGCTTGGAGTTGAGGCTTGGGAGTCTCTTCGAAATTTTGCACAAAAACATGGAGATTTAGATCTTGAAGATCATGCGGAGGAGGTGTTAACATGTCTTGATCCTTCAAAAGCCGTTGCTGATAAACTTCCCCCGCCTCCAAGAAAGAAGCAGTCTGATATGAACATGCTAGAGGAGAAGAATAGGGTGACTGAGTATCGGTATTCTATACCCTATAAAGAAGAGGCTCATGAGAAATTGGGAGGTTTGAGTGGGCAGATGAGGGAAGCAGGTTATGTGCCGGATACAAGATATGTCCTCCATGACATTGATGAGGAGGAAAAAGAGAAGGCCTTGCAATATCATAGCGAACGTTTGGCAATTGCTTATGGCCTCATCAGTACACCACCGAGGACTACACTGAGAATCATCAAGAACCTACGCATCTGTGGGGACTGCCACAATGCAATTAAAATCATGTCAAAGATTGTTGGTAGGGAGCTAATTGTTAGGGATAACAAGCGATTCCATCATTTCAAAGATGGAAAATGCTCCTGTGGAGATTATTGGTAG

Predicted protein sequences of Glyma01g00640

Limit To All Plant Sequences

>Glyma01g00640.2   sequence type=predicted peptide   gene model=Glyma01g00640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELKLHTSMASIPRAVFTHSSSSIPFCAYAVPNASRRRNGTNNSRSTHKIPPLCKGNLPNEQKLQLDHQNQNAPLPLNVDLVSLCEEGNLDQVLELMGQGAVADYRVYLALLNLCEHTRSLESGKRVHEFLRRSTFRRDVELSNRLIGMYCKCGSVKDARRVFDQIPERNISSWHLMIGGYAANGLGCDGLLVFQQMKQAGVPPDGETFELVLAACAQAEAVEEGFLHFESMKEHGIVPSMEHYLEVINILGNTGQLNEAEEFIEKIPIELGVEAWESLRNFAQKHGDLDLEDHAEEVLTCLDPSKAVADKLPPPPRKKQSDMNMLEEKNRVTEYRYSIPYKEEAHEKLGGLSGQMREAGYVPDTRYVLHDIDEEEKEKALQYHSERLAIAYGLISTPPRTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW*

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