Glyma01g00610 - SoyBase

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Report for Sequence Feature Glyma01g00610

Feature Type:	gene_model
Chromosome:	Gm01
Start:	369323
stop:	372643
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g00610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18400	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:10170024-10171221 REVERSE LENGTH=107	SoyBase	E_val: 7.00E-21	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6TBP6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TBP6_SOYBN	SoyBase	E_val: 5.00E-35	ISS

Expression Patterns of Glyma01g00610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g00610 not represented in the dataset	Glyma01g00610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g00610

Paralog	Evidence	Comments
Glyma07g15470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g00610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g003100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g00610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g00610

Limit To All Plant Sequences

>Glyma01g00610.3   sequence type=transcript   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAGGAATAGCAGCAGCAGCAAGCTATGGCGGAAGAACCGAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAACGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTATACCATGCCGAATGCCTTGCATACTGTCAAGAGCTTTTGGAACTTCAAACTAAATGGGAAGAGGTTTTCAGGTGGTTGATGCATAACTCATTTAGAGAGCAAAATATGCACCGTCAGAGGATACCTTTTGCTTGCTGCTGGTGTAGCTGATAGTATCAGAGCACACATTTAATGTAGTATTGATGTACTTTTCAAATGCTACTGAGACGTCATGTTTGAGATTTCATCCATCGGCCTGCAGTTGTGGAAACATTTCCCCCTACTCGATAAAATACATATACGTAATACATTGATTTTTTATTGTGGGAATGATGTATAGAATGTTTTCGGTCCTGCATTCAGCTTCTGGGTACAATCCATTGTTGATATTTTAGCTTGCTTTGCAATTCTATTTCTTTTTTTTTTTGTTGTTGCAATTTTAGCTATATGCAACAAATTAGTGTACCGAGAAATCATCTACTGTGAAATTTTATTCATTTCAGGCTAAAATTTACGC

>Glyma01g00610.4   sequence type=transcript   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAGCAACACAAATTAGGCAATAATCTTTATACAGATGAGAAAACTGGGAGTTGTATTCGACAGTCCATTCCAGGTTGAGTTGAGATGAGATGAGAGGAATAGCAGCAGCAGCAAGCTATGGCGGAAGAACCGAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAACGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTATACCATGCCGAATGCCTTGCATACTGTCAAGAGCTTTTGGAACTTCAAACTAAATGGGAAGAGCCATATATTGACTTAAAAACTCCAGAGGAATCAAAAAAGGAGACAGCACGACCCTCTAAACGTGTAAAAAAGTTGCGTTAGGTTTTCAGGTGGTTGATGCATAACTCATTTAGAGAGCAAAATATGCACCGTCAGAGGATACCTTTTGCTTGCTGCTGGTGTAGCTGATAGTATCAGAGCACACATTTAATGTAGTATTGATGTACTTTTCAAATGCTACTGAGACGTCATGTTTGAGATTTCATCCATCGGCCTGCAGTTGTGGAAACATTTCCCCCTACTCGATAAAATACATATACGTAATACATTGATTTTTTATTGTGGGAATGATGTATAGAATGTTTTCGGTCCTGCATTCAGCTTCTGGGTACAATCCATTGTTGATATTTTAGCTTGCTTTGCAATTCTATTTCTTTTTTTTTTTGTTGTTGCAATTTTAGCTATATGCAACAAATTAGTGTACCGAGAAATCATCTACTGTGAAATTTTATTCATTTCAGGCTAAAATTTACGCAAGACTAGTCTATTATTGTGTGGAG

>Glyma01g00610.5   sequence type=transcript   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAGCCACTCTACATGAAACTACCGCAGCAGGTTGAGTTGAGATGAGATGAGAGGAATAGCAGCAGCAGCAAGCTATGGCGGAAGAACCGAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAACGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTATACCATGCCGAATGCCTTGCATACTGTCAAGAGCTTTTGGAACTTCAAACTAAATGGGAAGAGCCATATATTGACTTAAAAACTCCAGAGGAATCAAAAAAGGAGACAGCACGACCCTCTAAACGTGTAAAAAAGTTGCGTTAGGTTTTCAGGTGGTTGATGCATAACTCATTTAGAGAGCAAAATATGCACCGTCAGAGGATACCTTTTGCTTGCTGCTGGTGTAGCTGATAGTATCAGAGCACACATTTAATGTAGTATTGATGTACTTTTCAAATGCTACTGAGACGTCATGTTTGAGATTTCATCCATCGGCCTGCAGTTGTGGAAACATTTCCCCCTACTCGATAAAATACATATACGTAATACATTGATTTTTTATTGTGGGAATGATGTATAGAATGTTTTCGGTCCTGCATTCAGCTTCTGGGTACAATCCATTGTTGATATTTTAGCTTGCTTTGCAATTCTATTTCTTTTTTTTTTTGTTGTTGCAATTTTAGCTATATGCAACAAATTAGTGTACCGAGAAATCATCTACTGTGAAATTTTATTCATTTCAGGCTAAAATTTACGCAAGACTAGTCTATTATTGTGTGGAGAATAAGTTGAAGGTAGAGATTCCTGACCCGAGTTAAGTATACAAATCTGAACCTATACAAAATTCGAGATTCACAACGATTTCTCACTTCCTACAATCGCTTAATAATACAACTCTTACAAAGATTATAACAAGGAAAAGAACTGCTCCATCGTAAAACGTTTCCCGTAGGCTTCTTGATGGAGAGAAAAGAACTGCATGACATATGCAAAATTGCAAATTTTTATAATTATTTTACTAAAATTAAATACTGGTTTAC

Coding sequences of Glyma01g00610

Limit To All Plant Sequences

>Glyma01g00610.2   sequence type=CDS   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGAACCGAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAACGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTATACCATGCCGAATGCCTTGCATACTGTCAAGAGCTTTTGGAACTTCAAACTAAATGGGAAGAGCCATATATTGACTTAAAAACTCCAGAGGAATCAAAAAAGGAGACAGCACGACCCTCTAAACGTGTAAAAAAGTTGCGTTAG

>Glyma01g00610.3   sequence type=CDS   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGAACCGAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAACGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTATACCATGCCGAATGCCTTGCATACTGTCAAGAGCTTTTGGAACTTCAAACTAAATGGGAAGAGGTTTTCAGGTGGTTGATGCATAACTCATTTAGAGAGCAAAATATGCACCGTCAGAGGATACCTTTTGCTTGCTGCTGGTGTAGCTGA

>Glyma01g00610.4   sequence type=CDS   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGAACCGAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAACGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTATACCATGCCGAATGCCTTGCATACTGTCAAGAGCTTTTGGAACTTCAAACTAAATGGGAAGAGCCATATATTGACTTAAAAACTCCAGAGGAATCAAAAAAGGAGACAGCACGACCCTCTAAACGTGTAAAAAAGTTGCGTTAG

>Glyma01g00610.5   sequence type=CDS   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGAACCGAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAACGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTATACCATGCCGAATGCCTTGCATACTGTCAAGAGCTTTTGGAACTTCAAACTAAATGGGAAGAGCCATATATTGACTTAAAAACTCCAGAGGAATCAAAAAAGGAGACAGCACGACCCTCTAAACGTGTAAAAAAGTTGCGTTAG

Predicted protein sequences of Glyma01g00610

Limit To All Plant Sequences

>Glyma01g00610.2   sequence type=predicted peptide   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEPKVPPPSNPTLSFDPSRTVGIIKRKALIKDLAAVYHAECLAYCQELLELQTKWEEPYIDLKTPEESKKETARPSKRVKKLR*

>Glyma01g00610.3   sequence type=predicted peptide   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEPKVPPPSNPTLSFDPSRTVGIIKRKALIKDLAAVYHAECLAYCQELLELQTKWEEVFRWLMHNSFREQNMHRQRIPFACCWCS*

>Glyma01g00610.4   sequence type=predicted peptide   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEPKVPPPSNPTLSFDPSRTVGIIKRKALIKDLAAVYHAECLAYCQELLELQTKWEEPYIDLKTPEESKKETARPSKRVKKLR*

>Glyma01g00610.5   sequence type=predicted peptide   gene model=Glyma01g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEPKVPPPSNPTLSFDPSRTVGIIKRKALIKDLAAVYHAECLAYCQELLELQTKWEEPYIDLKTPEESKKETARPSKRVKKLR*

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