SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G29680 | AT | Annotation by Michelle Graham. TAIR10: Alkaline-phosphatase-like family protein | chr4:14538067-14539557 REVERSE LENGTH=496 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG2645 | KOG | Type I phosphodiesterase/nucleotide pyrophosphatase | JGI | ISS | |
| PTHR10151 | Panther | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE | JGI | ISS | |
| PTHR10151:SF25 | Panther | PHOSPHODIESTERASE/NUCLEOTIDE PYROPHOSPHATASE-RELAT | JGI | ISS | |
| PF01663 | PFAM | Type I phosphodiesterase / nucleotide pyrophosphatase | JGI | ISS | |
| UniRef100_D7MCJ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Type I phosphodiesterase/nucleotide pyrophosphatase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MCJ0_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J4B5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4B5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g00560 not represented in the dataset |
Glyma01g00560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g15560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g002600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g00560.1 sequence type=CDS gene model=Glyma01g00560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGCAAAAGAATCATCATCAACATCAACATCAACATCAACATCAACCCCTCTCCTCTCCAGCACTAACCCTTCTTCCACCACTTTCACTTCCCGCATTCTCCTCTTGGTCGCCTCCATGTTCCTCCTCGCAGCCTTCGTTCTCGCCCTCTACTTCTCCTCCCCAACGTCGTCGTCGCCGTCGCTGCCTCCGCCACGCGCCAAGCTCCCCCACCCGGTGGTGATCCTCATTTCCTCCGACGGCTTCCGATTCGGGTACCAGTTCAAGACCCCCGCTCCCAACATCCAGCGTCTGATAAAAAACGGCACCGAGGCCGAGACCGGACTCATCCCTGTCTTTCCCACCCTCACCTTCCCCAACCACTACTCCATCGTCACCGGGCTCTACCCTCCCCACCACGGCATCGTCAACAACGTCTTCTTCGACCCCCTCACCGGCGAGAAGTTCACCATGCAATCCCACCAACCCAAGTGGTGGCTCGCCCAGCCCCTCTGGGAGACCGTCCTCCTCCACAACCTCTCCGCCGCCACCTACTTCTGGCCCGGCTCCGAGGTACCCAAAGGCCCCTGGACTTGCCCTAAAGCCTTTTGCCAGCCCTACAACGAATCCGTCCCCTTTCAGGACAGAGTAGACACTGTTCTCAGCTATTTCGATTTACCCTCTCATCAAGTTCCTTCCTTTATTACGCTCTATTTTGAAGACCCTGATCATCAGGGTCACCAGGTTGGCCCTGATGATTCTCAAATCACTCAAGCCGTTGCGGAAATTGATGCCATTGTGGGGAGACTCATTCAGGGTTTGGAACAAAGAGGTGTTTTTCAGGATGTTCACCTTATCATGGTCGGTGACCATGGCATGGTTGGTACCTGCGATAAAAAGCTTGTCTTTTTGGATGATTTGGCTCCTTGGATCCAGATTCCACGAGATTGGGTCCAGTATTTGACTCCAATACTCTCGATTCGTCCTCCTCCTTCAGTTGATCCGGCACACGTTGTTGCTAAGATGAATGAAGGGTTGAATTCGGGGAAAGTTGAGAATGGGGCCAAATTGAGGGTTTATTTAAAGGAAGATTTGCCGAGGAGGCTTCACTATTCGGCAAGTGATCGGATTCCGCCCATAATTGGTTTGGCTGATGAGGGTTTTAAGGTTGAGCAGAACCGAACGGGGGAGAAGGAGTGTGGCGGTGCACATGGTTATGACAACGCGTTTTTCTCCATGAGGACTATATTTATTGGACATGGTCCTAGGTTTGCTAGAGGGAAGAAGATACCCTCCTTTGAGAATGTTGAGATTTATAATTTGGTTACTTCCATTCTTGACATTAAGGGTGCGCCTAATAATGGCTCTACCTCATTTCCGGATTCTGTTCTCCTGCCTGTTGCATGA
>Glyma01g00560.1 sequence type=predicted peptide gene model=Glyma01g00560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMAKESSSTSTSTSTSTPLLSSTNPSSTTFTSRILLLVASMFLLAAFVLALYFSSPTSSSPSLPPPRAKLPHPVVILISSDGFRFGYQFKTPAPNIQRLIKNGTEAETGLIPVFPTLTFPNHYSIVTGLYPPHHGIVNNVFFDPLTGEKFTMQSHQPKWWLAQPLWETVLLHNLSAATYFWPGSEVPKGPWTCPKAFCQPYNESVPFQDRVDTVLSYFDLPSHQVPSFITLYFEDPDHQGHQVGPDDSQITQAVAEIDAIVGRLIQGLEQRGVFQDVHLIMVGDHGMVGTCDKKLVFLDDLAPWIQIPRDWVQYLTPILSIRPPPSVDPAHVVAKMNEGLNSGKVENGAKLRVYLKEDLPRRLHYSASDRIPPIIGLADEGFKVEQNRTGEKECGGAHGYDNAFFSMRTIFIGHGPRFARGKKIPSFENVEIYNLVTSILDIKGAPNNGSTSFPDSVLLPVA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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