Glyma01g00520 - SoyBase

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Report for Sequence Feature Glyma01g00520

Feature Type:	gene_model
Chromosome:	Gm01
Start:	303946
stop:	308194
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g00520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35330	AT	Annotation by Michelle Graham. TAIR10: methyl-CPG-binding domain protein 02 \| chr5:13523725-13525270 REVERSE LENGTH=272	SoyBase	E_val: 6.00E-90	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0019899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme binding	SoyBase	N/A	ISS
PTHR15547	Panther	ZN-FINGER/BROMODOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR15547:SF6	Panther	ZN-FINGER/BROMODOMAIN CONTAINING	JGI		ISS
PF01429	PFAM	Methyl-CpG binding domain	JGI		ISS
PF07496	PFAM	CW-type Zinc Finger	JGI		ISS
UniRef100_B9SJS0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJS0_RICCO	SoyBase	E_val: 2.00E-110	ISS
UniRef100_I1J4B1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4B1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g00520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g00520 not represented in the dataset	Glyma01g00520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g00520

Paralog	Evidence	Comments
Glyma07g15620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g00520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g002200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g00520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g00520

Limit To All Plant Sequences

>Glyma01g00520.3   sequence type=transcript   gene model=Glyma01g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTTATCCAGCAAAATAAAAGAGAAGGGATGAAGTGTATATATCATTTTAAGGAAGCAATGGAAAGGAGAGGAGGTTAGTTGTTCATTTTCATCATTTCGTTGTTTCTTTTCCAGACATCAAATCAAACCAAGCACTACCAAATTTCTCTTCCCTTCCCAGAGCTTCAACAACAACATCTTCTTACGTTTCTGAGTCCGAAACAAGCATTTTTGTGTGTTCCTCCCCCTCCCGTCAGGTGCTAGACTTCTAGGAAAATCAGATGTATCACGGTAAATTTTCCCTTACACCCAAGAATGAAGTCAAGGACTTGACAGGTTCAAGTTTTCCCAGTTACAAACATAGCAGTCAGCTGGATCCCATAGATGTTTCTTCATCTTCAGATGATGAAAATGACCTTCCTAATGATGATGTGTCTAATCAATTAGTCCTTTATGATCCTGTGGCGAATGGAAACAATGCAATTGAACTTGCACCTGATCCTCTCCAGTGTGAACCTCCATTGCTTCCAAGAAGCAAACCTTCACATTCAGTTCCTAGAGCTTTGCCTTCAGTTGGTGTTTTCACTGTTCAATGTGCATCCTGCTTGAAATGGAGGTTGATTCCAACAAAGGAAAAATATGAAGAAATACGTGAACATATCATTGAACAACCTTTTGTTTGTCAAAAAGCTCGTGAGTGGCGACCTGATGTATCTTGTGATGATCCAGAGGATATTTCTCAGGATGGCAGCAGGGTTTGGGCCATTGATAAGCCAAACATTGCACAGCCTCCAGCTGGATGGGAGCGACTGCTAAGGATCAGAGCTGAAGGAAGCTCCAAATTTGCAGATATATACTATATAGCACCATCAGGCAAGAGATTGCGCTCAATGGTAGAGGTCCAGAAGTTCTTGATGGAGCATCCTGAGTATACAAGAGATGGGGTAACTCTTTCACAGTTCTCATTTCAAATTCCAAGGCCATTACAAGAAAACTATGTGAGGAAGCGCTCCGCTAGACTTACCTCTTCATATGAAGTCAGCGAGCCTGTTGAACATCAGCAAGTGAGTCCTCTAGCATGGGTAGATCCAGAAGGGTGTGGTGGAAGACTGGGGCTTCCTCCCCCCCCATTCATGGGATCCCATGATCTTGACACTACTATCAATATGAGTATCAGCCGTCCTGCAAAGAGGCAAGCAACTCATAAAGGTTCCCTGTAGTAAGATGGACCCTCATCAAATCTCTAAATTCAACATCCTTTTGTGTTATGTGCAGTCGATTGCATCTTACTTACTTACAAATAGAGAAATGGTTTATCTTTTTTAATAGAATAGGGCATTTTAGATGTAATGAGCTTGCGGAAAACTGTGTAGAGACAGTCCACTTGTCCTATAATTAGTTATTGAGGAGATCAATACCTTGGTATTCCTGGTAAAAATGTACTATTTTGCATCTGTGGAATTTTCTGGGAGAATCTTTTGTACAAAAGGATTGCATCTTACTTACTTACAAATAGAGAAATAGTTTATCCTTTTTAATAGAATAGGGCATTTTAGGTGTAATGAGCTTGCGGAAAACTGTGTAGAGACGGTCCACTTGTCCTAGAATTATTTATCGAGGAGATCAATACCTTGGTATTCCTGGTAAAAATGTAGTATTTTGCATCTGTGGAATTTTCTGGGAGAATCTTTTGTACAAAAGGGTGCCTGCCCCAAGAGAACATGTTAGACTCAAGTAATATTCTGATCTGAAATATGGTGATTCAGCAAGAGGGTAATTTGCTCTTAAC

>Glyma01g00520.4   sequence type=transcript   gene model=Glyma01g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTTATCCAGCAAAATAAAAGAGAAGGGATGAAGTGTATATATCATTTTAAGGAAGCAATGGAAAGGAGAGGAGGTTAGTTGTTCATTTTCATCATTTCGTTGTTTCTTTTCCAGACATCAAATCAAACCAAGCACTACCAAATTTCTCTTCCCTTCCCAGAGCTTCAACAACAACATCTTCTTACGTTTCTGAGTCCGAAACAAGCATTTTTGTGTGTTCCTCCCCCTCCCGTCAGGGTTTCGGCTTGTATAAAACCCTTTCAAAATTCATAACTATCATGCCTCACTTGTGCTCTCCTACCTTGCGGCTACTACACAACCCTTGTACGCAACCCTCCAGCGACCATTGTGTAACTCTCCGGCAACCTGTCTAGCAGCATTTTTTACTTCTCTCCTGTTCTCATTCTCAGGTGCTAGACTTCTAGGAAAATCAGATGTATCACGGTAAATTTTCCCTTACACCCAAGAATGAAGTCAAGGACTTGACAGGTTCAAGTTTTCCCAGTTACAAACATAGCAGTCAGCTGGATCCCATAGATGTTTCTTCATCTTCAGATGATGAAAATGACCTTCCTAATGATGATGTGTCTAATCAATTAGTCCTTTATGATCCTGTGGCGAATGGAAACAATGCAATTGAACTTGCACCTGATCCTCTCCAGTGTGAACCTCCATTGCTTCCAAGAAGCAAACCTTCACATTCAGTTCCTAGAGCTTTGCCTTCAGTTGGTGTTTTCACTGTTCAATGTGCATCCTGCTTGAAATGGAGGTTGATTCCAACAAAGGAAAAATATGAAGAAATACGTGAACATATCATTGAACAACCTTTTGTTTGTCAAAAAGCTCGTGAGTGGCGACCTGATGTATCTTGTGATGATCCAGAGGATATTTCTCAGGATGGCAGCAGGGTTTGGGCCATTGATAAGCCAAACATTGCACAGCCTCCAGCTGGATGGGAGCGACTGCTAAGGATCAGAGCTGAAGGAAGCTCCAAATTTGCAGATATATACTATATAGCACCATCAGGCAAGAGATTGCGCTCAATGGTAGAGGTCCAGAAGTTCTTGATGGAGCATCCTGAGTATACAAGAGATGGGGTAACTCTTTCACAGTTCTCATTTCAAATTCCAAGGCCATTACAAGAAAACTATGTGAGGAAGCGCTCCGCTAGACTTACCTCTTCATATGAAGTCAGCGAGCCTGTTGAACATCAGCAAGTGAGTCCTCTAGCATGGGTAGATCCAGAAGGGTGTGGTGGAAGACTGGGGCTTCCTCCCCCCCCATTCATGGGATCCCATGATCTTGACACTACTATCAATATGAGTATCAGCCGTCCTGCAAAGAGGCAAGCAACTCATAAAGGTTCCCTGTAGTAAGATGGACCCTCATCAAATCTCTAAATTCAACATCCTTTTGTGTTATGTGCAGTCGATTGCATCTTACTTACTTACAAATAGAGAAATGGTTTATCTTTTTTAATAGAATAGGGCATTTTAGATGTAATGAGCTTGCGGAAAACTGTGTAGAGACAGTCCACTTGTCCTATAATTAGTTATTGAGGAGATCAATACCTTGGTATTCCTGGTAAAAATGTACTATTTTGCATCTGTGGAATTTTCTGGGAGAATCTTTTGTACAAAAGGATTGCATCTTACTTACTTACAAATAGAGAAATAGTTTATCCTTTTTAATAGAATAGGGCATTTTAGGTGTAATGAGCTTGCGGAAAACTGTGTAGAGACGGTCCACTTGTCCTAGAATTATTTATCGAGGAGATCAATACCTTGGTATTCCTGGTAAAAATGTAGTATTTTGCATCTGTGGAATTTTCTGGGAGAATCTTTTGTACAAAAGGGTGCCTGCCCCAAGAGAACATGTTAGACTCAAGTAATATTCTGATCTGAAATATGGTGATTCAGCAAGAGGGTAATTTGCTCTTAAC

Coding sequences of Glyma01g00520

Limit To All Plant Sequences

>Glyma01g00520.2   sequence type=CDS   gene model=Glyma01g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCACGGTAAATTTTCCCTTACACCCAAGAATGAAGTCAAGGACTTGACAGGTTCAAGTTTTCCCAGTTACAAACATAGCAGTCAGCTGGATCCCATAGATGTTTCTTCATCTTCAGATGATGAAAATGACCTTCCTAATGATGATGTGTCTAATCAATTAGTCCTTTATGATCCTGTGGCGAATGGAAACAATGCAATTGAACTTGCACCTGATCCTCTCCAGTGTGAACCTCCATTGCTTCCAAGAAGCAAACCTTCACATTCAGTTCCTAGAGCTTTGCCTTCAGTTGGTGTTTTCACTGTTCAATGTGCATCCTGCTTGAAATGGAGGTTGATTCCAACAAAGGAAAAATATGAAGAAATACGTGAACATATCATTGAACAACCTTTTGTTTGTCAAAAAGCTCGTGAGTGGCGACCTGATGTATCTTGTGATGATCCAGAGGATATTTCTCAGGATGGCAGCAGGGTTTGGGCCATTGATAAGCCAAACATTGCACAGCCTCCAGCTGGATGGGAGCGACTGCTAAGGATCAGAGCTGAAGGAAGCTCCAAATTTGCAGATATATACTATATAGCACCATCAGGCAAGAGATTGCGCTCAATGGTAGAGGTCCAGAAGTTCTTGATGGAGCATCCTGAGTATACAAGAGATGGGGTAACTCTTTCACAGTTCTCATTTCAAATTCCAAGGCCATTACAAGAAAACTATGTGAGGAAGCGCTCCGCTAGACTTACCTCTTCATATGAAGTCAGCGAGCCTGTTGAACATCAGCAAGTGAGTCCTCTAGCATGGGTAGATCCAGAAGGGTGTGGTGGAAGACTGGGGCTTCCTCCCCCCCCATTCATGGGATCCCATGATCTTGACACTACTATCAATATGAGTATCAGCCGTCCTGCAAAGAGGCAAGCAACTCATAAAGGTTCCCTGTAG

>Glyma01g00520.3   sequence type=CDS   gene model=Glyma01g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCACGGTAAATTTTCCCTTACACCCAAGAATGAAGTCAAGGACTTGACAGGTTCAAGTTTTCCCAGTTACAAACATAGCAGTCAGCTGGATCCCATAGATGTTTCTTCATCTTCAGATGATGAAAATGACCTTCCTAATGATGATGTGTCTAATCAATTAGTCCTTTATGATCCTGTGGCGAATGGAAACAATGCAATTGAACTTGCACCTGATCCTCTCCAGTGTGAACCTCCATTGCTTCCAAGAAGCAAACCTTCACATTCAGTTCCTAGAGCTTTGCCTTCAGTTGGTGTTTTCACTGTTCAATGTGCATCCTGCTTGAAATGGAGGTTGATTCCAACAAAGGAAAAATATGAAGAAATACGTGAACATATCATTGAACAACCTTTTGTTTGTCAAAAAGCTCGTGAGTGGCGACCTGATGTATCTTGTGATGATCCAGAGGATATTTCTCAGGATGGCAGCAGGGTTTGGGCCATTGATAAGCCAAACATTGCACAGCCTCCAGCTGGATGGGAGCGACTGCTAAGGATCAGAGCTGAAGGAAGCTCCAAATTTGCAGATATATACTATATAGCACCATCAGGCAAGAGATTGCGCTCAATGGTAGAGGTCCAGAAGTTCTTGATGGAGCATCCTGAGTATACAAGAGATGGGGTAACTCTTTCACAGTTCTCATTTCAAATTCCAAGGCCATTACAAGAAAACTATGTGAGGAAGCGCTCCGCTAGACTTACCTCTTCATATGAAGTCAGCGAGCCTGTTGAACATCAGCAAGTGAGTCCTCTAGCATGGGTAGATCCAGAAGGGTGTGGTGGAAGACTGGGGCTTCCTCCCCCCCCATTCATGGGATCCCATGATCTTGACACTACTATCAATATGAGTATCAGCCGTCCTGCAAAGAGGCAAGCAACTCATAAAGGTTCCCTGTAG

>Glyma01g00520.4   sequence type=CDS   gene model=Glyma01g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCACGGTAAATTTTCCCTTACACCCAAGAATGAAGTCAAGGACTTGACAGGTTCAAGTTTTCCCAGTTACAAACATAGCAGTCAGCTGGATCCCATAGATGTTTCTTCATCTTCAGATGATGAAAATGACCTTCCTAATGATGATGTGTCTAATCAATTAGTCCTTTATGATCCTGTGGCGAATGGAAACAATGCAATTGAACTTGCACCTGATCCTCTCCAGTGTGAACCTCCATTGCTTCCAAGAAGCAAACCTTCACATTCAGTTCCTAGAGCTTTGCCTTCAGTTGGTGTTTTCACTGTTCAATGTGCATCCTGCTTGAAATGGAGGTTGATTCCAACAAAGGAAAAATATGAAGAAATACGTGAACATATCATTGAACAACCTTTTGTTTGTCAAAAAGCTCGTGAGTGGCGACCTGATGTATCTTGTGATGATCCAGAGGATATTTCTCAGGATGGCAGCAGGGTTTGGGCCATTGATAAGCCAAACATTGCACAGCCTCCAGCTGGATGGGAGCGACTGCTAAGGATCAGAGCTGAAGGAAGCTCCAAATTTGCAGATATATACTATATAGCACCATCAGGCAAGAGATTGCGCTCAATGGTAGAGGTCCAGAAGTTCTTGATGGAGCATCCTGAGTATACAAGAGATGGGGTAACTCTTTCACAGTTCTCATTTCAAATTCCAAGGCCATTACAAGAAAACTATGTGAGGAAGCGCTCCGCTAGACTTACCTCTTCATATGAAGTCAGCGAGCCTGTTGAACATCAGCAAGTGAGTCCTCTAGCATGGGTAGATCCAGAAGGGTGTGGTGGAAGACTGGGGCTTCCTCCCCCCCCATTCATGGGATCCCATGATCTTGACACTACTATCAATATGAGTATCAGCCGTCCTGCAAAGAGGCAAGCAACTCATAAAGGTTCCCTGTAG

Predicted protein sequences of Glyma01g00520

Limit To All Plant Sequences

>Glyma01g00520.2   sequence type=predicted peptide   gene model=Glyma01g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYHGKFSLTPKNEVKDLTGSSFPSYKHSSQLDPIDVSSSSDDENDLPNDDVSNQLVLYDPVANGNNAIELAPDPLQCEPPLLPRSKPSHSVPRALPSVGVFTVQCASCLKWRLIPTKEKYEEIREHIIEQPFVCQKAREWRPDVSCDDPEDISQDGSRVWAIDKPNIAQPPAGWERLLRIRAEGSSKFADIYYIAPSGKRLRSMVEVQKFLMEHPEYTRDGVTLSQFSFQIPRPLQENYVRKRSARLTSSYEVSEPVEHQQVSPLAWVDPEGCGGRLGLPPPPFMGSHDLDTTINMSISRPAKRQATHKGSL*

>Glyma01g00520.3   sequence type=predicted peptide   gene model=Glyma01g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYHGKFSLTPKNEVKDLTGSSFPSYKHSSQLDPIDVSSSSDDENDLPNDDVSNQLVLYDPVANGNNAIELAPDPLQCEPPLLPRSKPSHSVPRALPSVGVFTVQCASCLKWRLIPTKEKYEEIREHIIEQPFVCQKAREWRPDVSCDDPEDISQDGSRVWAIDKPNIAQPPAGWERLLRIRAEGSSKFADIYYIAPSGKRLRSMVEVQKFLMEHPEYTRDGVTLSQFSFQIPRPLQENYVRKRSARLTSSYEVSEPVEHQQVSPLAWVDPEGCGGRLGLPPPPFMGSHDLDTTINMSISRPAKRQATHKGSL*

>Glyma01g00520.4   sequence type=predicted peptide   gene model=Glyma01g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYHGKFSLTPKNEVKDLTGSSFPSYKHSSQLDPIDVSSSSDDENDLPNDDVSNQLVLYDPVANGNNAIELAPDPLQCEPPLLPRSKPSHSVPRALPSVGVFTVQCASCLKWRLIPTKEKYEEIREHIIEQPFVCQKAREWRPDVSCDDPEDISQDGSRVWAIDKPNIAQPPAGWERLLRIRAEGSSKFADIYYIAPSGKRLRSMVEVQKFLMEHPEYTRDGVTLSQFSFQIPRPLQENYVRKRSARLTSSYEVSEPVEHQQVSPLAWVDPEGCGGRLGLPPPPFMGSHDLDTTINMSISRPAKRQATHKGSL*

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